Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01255 ATGCTTCCATTGCTGCAGCTCGTCGCCCTCCTCCTTCATTTCATCTTCATTTCATCTTTTTCAGCAGCCTTAGCTCATAATCATGATGACCCAACAATCAGAACCATGGAGGCTTTTTCCGGGTACCCAGTTCACGAACCTTCCTCACATGGCTTCTCAACCCCCATTACTTCTCTGTCCGTCGATGCTGACACCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCAGTTACAAGGATTCTTTACACTGAGAAGGATGTATTGGCACGAAGGTTTGTCAAAAGCTTAATGGGACTCTCTGGTCTCTCTGTTCGAGAGGATGCCGTTGGTAACATATTTGGTAGATGGGATGGTTCTGAACCAGACCTTCCCGCCGTTGCCACAGGTTCTCATGCTGATGCAATTCCATTCTCTGGGAAGTATGATGGAGTTGTTGGTGTTTTAGGTGCTTTAGAAGCCATCAACGTCTTGAAAAGGTCCGGGTTTAAACCTAAGAGGTCTCTGGAAATTATCTTCTTCACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGTTGGCAGGGAGTGATGCACTTGCTAAAGCCTTGGAAACAACTGTTGATGGTCAGAATATATCTTTTATCAGTGCTGCTAGTTCTGCTGGCTACTTAACCGATCCAGCTCAGATATCAACTGTGTTTTTAAAGAAAGGAAGTTACTCTGCTTTCCTTGAATTGCACATAGAGCAAGGTCCCATTCTGGAGGAAGAAGGTATATCAATAGGAGTTGTGACTGCGATTGCAGCCCCTGCTAGTCTGAAGGTTGAGTTTGAAGGCACTGGTGGCCATGCTGGTGCTGTACTGATGCCATATAGAAATGACGCTGGACTTGCAGCAGCTGAGCTAGCACTTGCAGTTGAGAAGCATGTATTGGACTCTGGATCCATCGACACTGTTGGTACCGTTGGTATCTTGGAGCTTCATCCTGGAGCAATCAACAGCATCCCAAGCAAATCACATCTGGAAATAGACACTAGAGACATTGATGAAGAGCGTAGAAACATAGTACTTAAGAAGATTCACGAATCTGCCAATGAAATAGCTAAAAGGCGACGGGTCAAACTATCTGAATTCAAAATTATAAACCAGGATCCGCCAGCACATTCTGATAAATCAATTATAGAGGCTATGGTTTCAGCAGCAAAAGATCTCAATCTCACACACAAACTGATGATTAGTAGAGCATACCATGATTCACTGTTTATGGCCAGGGTGTCCCCAATGGGTATGATTTTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCAGAAGAATTCGCCTCTCTTAAGGATATGTCAAACGGAGTCAAGGTATTGGCCCTTACCCTTGCCAAATTGTCGCTGCAGTGA 1425 45.05 MLPLLQLVALLLHFIFISSFSAALAHNHDDPTIRTMEAFSGYPVHEPSSHGFSTPITSLSVDADTLVKQIEELSTFSDSPAPSVTRILYTEKDVLARRFVKSLMGLSGLSVREDAVGNIFGRWDGSEPDLPAVATGSHADAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEIIFFTSEEPTRFGISCLGSRLLAGSDALAKALETTVDGQNISFISAASSAGYLTDPAQISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASLKVEFEGTGGHAGAVLMPYRNDAGLAAAELALAVEKHVLDSGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNIVLKKIHESANEIAKRRRVKLSEFKIINQDPPAHSDKSIIEAMVSAAKDLNLTHKLMISRAYHDSLFMARVSPMGMIFIPCYKGYSHKPEEFASLKDMSNGVKVLALTLAKLSLQ* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9598059 9602067 + CsaV3_3G012550.1 Csa03g01255 522160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01255 474 CDD M20_bAS 66 469 - -
Csa03g01255 474 Pfam Peptidase family M20/M25/M40 136 469 IPR002933 GO:0016787
Csa03g01255 474 PANTHER ALLANTOATE DEIMINASE-RELATED 58 469 - -
Csa03g01255 474 Gene3D - 274 390 - -
Csa03g01255 474 SUPERFAMILY Zn-dependent exopeptidases 57 471 - -
Csa03g01255 474 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 66 470 IPR010158 GO:0016813
Csa03g01255 474 Gene3D Zn peptidases 73 464 - -
Csa03g01255 474 PANTHER ALLANTOATE DEIMINASE-RELATED 58 469 IPR010158 GO:0016813
Csa03g01255 474 SUPERFAMILY Bacterial exopeptidase dimerisation domain 277 387 IPR036264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01255 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 897.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01013 Csa-Chr1:6282799 Csa03g01255 Csa-Chr3:9598059 2.48E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01255 Csa_Chr03 FPKM 7.30696 8.769186 6.758781 6.202931 19.337225 18.659031 18.124559 1.564003 1.763572 1.766543