Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01261 ATGGCTCTATTACACAGTCGTTTATGCCATGCCACGAACTTCTTCGATACATTTCAGACTGAATTCCACAGTTCTCACATTTTACTGAAGTACGGTTCGTCTGTTGTCTTCAGAAACCGCTCTTTCTGCTCTTCGTTTTATGGTTTAACCACCGATACTTTTTCCAATGGAATTTCGTATGGGAGTTTAAGCTCGCGAACACCCGTTTACCGATATAATTTGAGAAGAAATTTATCCCGTGTTAGTTGGATAGACAGGTGGAATGAAACCGCGAAACGGAATCGTCCTAAACCACCTCGTGCTGTGTTGGATTATCCCAGTAGCGATGAAAATGAAGTTTCAATTTCAAGTACAGGTTTTTCGAAGAGTTATAGAGCTAGTAGTCGGATTGATGATGATGGAAGAGGCGGAAGTACAATGGAGAAGATAGTGAGGAAATTGAAGAAATTTGGGTACATCGACGATGAGAATAAAGAGAAGGGGGAAGAGAGAGCCATTGAAAAGGGGTCTGTGGAGGACATACTTTATATTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTAAGGAATCGCCTATGGGAGATGAGAACATGTTTGGAAGTGATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAAGAAAAGGAAGATACACATGGGGATTCAACAAGAAGGGGCAGCGCATCATTGGCACAATTGACTCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAGGCACAAGATGAAGATAGGAGGTGGTGGAGTGACTCAAGCTGTTGTGGATGTCATTCATGAAAAATGGAAATCATCAGAGATTGTGAGGCTTAAAATTCTCGGTCCTCCTGCACTTAACATGAAAAGGATGCATGAGATATTGGAGAGAAAAACCGGTGGACTGGTTATTTGGAGGTCGGGAACTTCGTTGTCTCTATATAGAGGTGTCAGCTATGAACTTCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATGAAATCACTGCATTGCCTAAAACTGGTGCTAGTACTATAGCTCCTTCTGAATCTTCTTCTCACCGTAATGTTTATGCTTTGCAACAAAAAAGAGCAGAAACTTCCATAGAGGGTGAACATTGCAGCGAACAATTGACAAAAGTACAAGTGAATTATGAGGATGAAGTAAATAAATTGCTGGATGGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTGCCCGTAGATGCAGATATGCTCCCAGGAGTAGTTCCTGACTATGAACCTCCATTTAGAATACTTCCTTATGGAGTGAGATCTTCTATTGGAGTTAAGGAAGCCACAGCCTTAAAAAGACTTGCCAGAAGACTCCCTCCTCATTTTGCATTAGGCAGAAACAGACAGCTTCAAGGATTGGCCATTGCAATGACTAAATTGTGGGAACGAAGTTTAATTGCAAAAATCGCCCTGAAACGAGGTGTGCAGCTGACTACTAGCGAAAGAATGGCTGAAGAGATCAAGAAATTGACGGGAGGCATGCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTAACTGAAGCTTTGCTAGAAAGGGAGAGGTTGGCAAAATCTCTACAGGACAAGGAAGAACAGGCAAGGTTGAAAGCATCAGCCTTTGTGGTACCCATTGAGAAAACAGAGCAATCTGGAACTGCTGGTTCTCTAGAGGAAACACTAGATGCTGATGCTAGATGGGGAAAGGCTCTGGATGACAAGCACAAGGAAAACGTAATGCGGGAAGCTGAACAATTGAGGCACACCGACCTTGTTAGGAAGTTGGAACGAAAGCTTGCTTTTGCTGAAAGAAAATTGGTGAAAGCTGAACGAACATTAGCTAAGGTCGAAGCATTTATGACACCAGCGAAACGGCAGGCTGAACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTCGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCCAATTCCTTTGACCATGTCAAGAATATTGCTCTGCAACTCGAAGCTGAGAGTGGGGGTGTCCTAGTTTCAATTGACAAAGTCTCCAAAGGATATGCTATAATCGTTTATCGAGGAAAGGATTATAAACGGCCATCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTGGCACGCTCGATCGAGCTTCAAAGGCATGAGGCTTTGCTAAAACATATATCAGCAATGCAGAGTAAAGTGGGCAAACTAAATTCTGAAATCGAACAAATGGAGAAGGTGAAAGACCAAGGGGATGAAGTATTATACAATACTCTAGATTCTGCTTATCCTACTGACAATGACTCGGAGGACGAAAACTCCGATACATATGAGGCATATGATCAGGATAGTGATGTTGAAGATGAAGACGATATCATGGCTAGCGACGAGTACCTAGAAGGGGATATTTCAAATGGAATCCAAGTACAAGAATCAGAGGTTGAATATGAGACCATCTGA 2625 42.51 MALLHSRLCHATNFFDTFQTEFHSSHILLKYGSSVVFRNRSFCSSFYGLTTDTFSNGISYGSLSSRTPVYRYNLRRNLSRVSWIDRWNETAKRNRPKPPRAVLDYPSSDENEVSISSTGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYIDDENKEKGEERAIEKGSVEDILYIEEGMLPNTRGGFSKESPMGDENMFGSDGEVRFPWEKPKEKEDTHGDSTRRGSASLAQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNEITALPKTGASTIAPSESSSHRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDEVNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKRLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGGMLLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDKEEQARLKASAFVVPIEKTEQSGTAGSLEETLDADARWGKALDDKHKENVMREAEQLRHTDLVRKLERKLAFAERKLVKAERTLAKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSKVGKLNSEIEQMEKVKDQGDEVLYNTLDSAYPTDNDSEDENSDTYEAYDQDSDVEDEDDIMASDEYLEGDISNGIQVQESEVEYETI* 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9646176 9651152 - CsaV3_3G012610.1 Csa03g01261 522166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01261 874 ProSiteProfiles CRM domain profile. 235 331 IPR001890 GO:0003723
Csa03g01261 874 SMART CRS1_YhbY_2 237 320 IPR001890 GO:0003723
Csa03g01261 874 SMART CRS1_YhbY_2 445 529 IPR001890 GO:0003723
Csa03g01261 874 SMART CRS1_YhbY_2 657 744 IPR001890 GO:0003723
Csa03g01261 874 SUPERFAMILY YhbY-like 236 325 IPR035920 -
Csa03g01261 874 ProSiteProfiles CRM domain profile. 655 755 IPR001890 GO:0003723
Csa03g01261 874 Coils Coil 617 644 - -
Csa03g01261 874 Coils Coil 538 558 - -
Csa03g01261 874 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 870 IPR045278 GO:0000375|GO:0003729
Csa03g01261 874 SUPERFAMILY YhbY-like 657 754 IPR035920 -
Csa03g01261 874 Gene3D - 656 758 IPR035920 -
Csa03g01261 874 Gene3D - 445 540 IPR035920 -
Csa03g01261 874 Gene3D - 235 335 IPR035920 -
Csa03g01261 874 Pfam CRS1 / YhbY (CRM) domain 448 529 IPR001890 GO:0003723
Csa03g01261 874 Pfam CRS1 / YhbY (CRM) domain 237 320 IPR001890 GO:0003723
Csa03g01261 874 Pfam CRS1 / YhbY (CRM) domain 658 744 IPR001890 GO:0003723
Csa03g01261 874 ProSiteProfiles CRM domain profile. 443 540 IPR001890 GO:0003723
Csa03g01261 874 MobiDBLite consensus disorder prediction 817 843 - -
Csa03g01261 874 SUPERFAMILY YhbY-like 447 536 IPR035920 -
Csa03g01261 874 Coils Coil 782 802 - -
Csa03g01261 874 MobiDBLite consensus disorder prediction 820 843 - -
Csa03g01261 874 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 1 870 IPR033262 GO:0000373
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01261 - - - csv:101216848 1714.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00386 Csa-Chr1:2392644 Csa03g01261 Csa-Chr3:9646176 1.34E-176 dispersed
Csa01g02938 Csa-Chr1:25800509 Csa03g01261 Csa-Chr3:9646176 0 dispersed
Csa02g02558 Csa-Chr2:22387025 Csa03g01261 Csa-Chr3:9646176 9.16E-130 dispersed
Csa03g01261 Csa-Chr3:9646176 Csa03g03896 Csa-Chr3:34192392 2.74E-140 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01261 Csa_Chr03 FPKM 11.53304 11.625766 7.44618 7.836814 2.894186 3.158188 1.965186 13.314512 15.173034 13.389534