Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01262 ATGTTTTATGAAGTGGAACTAGTGAGAGATGTGGAAATCACAGTGGAAAAGGAAAAGAGAGATGCTCACAATTTCCAGAGGTACATTATAACATGTTTATTAGAAAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTTCTGTTACTAGCTTGAGGAGCATAGGCAAGGGAATTGTTAAGAATGAGTCTCAATGTGTTTCATTCCCCATTACCTTTATTTGCCGAACCTTTTTGCCTTTTGAGGGGGAGATCTTACATGGAGTTGTTCGTCACATATTTCAGCGTGGATTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTCGTAAAATGCCAACCTACCAGTACGTTGGTGGTGAAAATCCGGTATTCTCAAGCAAAGAATTTGCTACGATTGGTAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAAGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCGGACTCCGATGAGTTTGACCTGTAA 573 39.97 MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPTYQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLSDSDEFDL* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9651697 9654222 + CsaV3_3G012620.1 Csa03g01262 522167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01262 190 SUPERFAMILY Nucleic acid-binding proteins 83 156 IPR012340 -
Csa03g01262 190 Gene3D - 85 179 IPR012340 -
Csa03g01262 190 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 7-LIKE PROTEIN 1 190 - -
Csa03g01262 190 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 1 77 IPR036898 -
Csa03g01262 190 Gene3D - 1 84 IPR036898 -
Csa03g01262 190 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 1 190 IPR045113 GO:0006352
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01262 K16253 NRPD7, NRPE7; DNA-directed RNA polymerase IV and V subunit 7 - csv:101218353 380.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01091 Csa03g01262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01262 Csa-Chr3:9651697 Csa05g01395 Csa-Chr5:14888575 1.16E-17 dispersed
Csa02g01091 Csa-Chr2:10631192 Csa03g01262 Csa-Chr3:9651697 1.68E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g610 Blo01g00098 . . Bda08g00267 . . . Bma05g01077 . Cmo17g00177 Cma06g01341 Cma14g01777 Car06g01163 Car14g01598 . Cpe08g00308 . . . . . . . . Cla06g00636 Cam06g0680 Cec06g0683 Cco06g0689 Clacu06g0666 Cmu06g0658 Cre06g1426 . . . Cone4ag0293 Lsi05g01668 Csa02g01091 Chy05g00352 Cme06g00544 . . . . Bpe05g00867 . . . . Cmo06g01353 Cmo14g01814 . Cma17g00180 . Car17g00162 Cpe12g00156 . Bhi12g01661 . . . Hepe03g0254 . . Cla05g00487 Cam05g0531 Cec05g0543 Cco05g0543 Clacu05g0529 Cmu05g0501 Cre05g0569 Lsi09g01264 Csa03g01262 Chy06g00517 Cme05g00531
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013666 0 0 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01262 Csa_Chr03 FPKM 27.546167 30.985914 32.713978 34.928028 27.11202 31.387041 30.191051 56.077198 50.123245 49.377544