Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01264 ATGGCGACGGCAACTGCGACAGTGAAATTACCCACTGAGAAGCTCATGGGTTGCTTGACATGCCCTCTTTGCCATAACTTGTTTACTAATGCTACCACCATATCTGAATGCCTCCACACATTTTGCAGGGATTGTATATATGAGAAGATAGCTGAAGAGGAATTAGAGGGTTGTCCTGTCTGCAACACAAATTTAGGGGGTGTGCCATTGGAGAAACTCAGGGCAGACCACACAATGGATGATTTAAGGGAAAAGATATTTTCTTGTAAATGGAGGAAGGAGAAGGAACCTGAGGAAACACAGTTGTCGTCCTCATCCTCAGTTTCATTGCCTACCAAAAGAAAAGAGGGACCTGTCTCTATTTTAGAGATTGACAATACGTACACAACTTCTGACTCTGGAACATCGAAAAAGTTGTCGGCATCTACAGCACAAGAGAGCTTAACCGAGCAACAATACCTTTCCACCATGATTGATCACACAAAACTCAACTTTGATCAAAATAAGCAGAACAATGGCCAAGTAATGGAAAGAATAATTGATGATTTGAATAAAAAGGAAGCAAGTGTAACATGCTCAAATGATTGTAAGATACAAGATACTCTCCCTAAGGCAGAAACAATCCAGATTGATGATAGCTATTGTAATGTTCAAGAACGTGGTTACAAGCCAATTATGGAAAGAGGTGAAAGAGAATCTCATGGAACTTCAGGTTCAATTGAACATGGTAAATTACAAGATCCTTTAGGTGACATTGATGCAGATAGGCAATGCAACAAGTCATCAAGTCCTATATGGTTTCAACTAGTTGCTTCTGATCACCAGGAAGGAAATGAGCCTTTGCCTCAGATTTCCTCAAACTACTTGAGGGTCAGCGATGGCAGTATACCTGTGTCATTTATCCAGAAATATCTTGCAAAGAAACTAGGTCTTGCTAGTGAGATTGAGGTGGAAATCTCATTCAAGGGTCAACCAGTGAGCTCCACATTGCATCTACATGACATTGTAGAACTGTGGCGACATACAACCACTAAAGTAGAACTAATACAAATATCTGTGGGCAGCTCGGCCAAGGATTTTGTGATGGTTCTATCTTATGGTCGGAAGTGTTATCACCCTGGAAAATTCACAAATATTTGTGCTCACTTAAACAATGGTGTTCAATAA 1167 40.45 MATATATVKLPTEKLMGCLTCPLCHNLFTNATTISECLHTFCRDCIYEKIAEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKIFSCKWRKEKEPEETQLSSSSSVSLPTKRKEGPVSILEIDNTYTTSDSGTSKKLSASTAQESLTEQQYLSTMIDHTKLNFDQNKQNNGQVMERIIDDLNKKEASVTCSNDCKIQDTLPKAETIQIDDSYCNVQERGYKPIMERGERESHGTSGSIEHGKLQDPLGDIDADRQCNKSSSPIWFQLVASDHQEGNEPLPQISSNYLRVSDGSIPVSFIQKYLAKKLGLASEIEVEISFKGQPVSSTLHLHDIVELWRHTTTKVELIQISVGSSAKDFVMVLSYGRKCYHPGKFTNICAHLNNGVQ* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9656058 9657867 - CsaV3_3G012640.1 Csa03g01264 522169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01264 388 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 7 369 - -
Csa03g01264 388 SMART ring_2 21 61 IPR001841 -
Csa03g01264 388 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Csa03g01264 388 MobiDBLite consensus disorder prediction 123 143 - -
Csa03g01264 388 SUPERFAMILY RING/U-box 15 83 - -
Csa03g01264 388 MobiDBLite consensus disorder prediction 227 254 - -
Csa03g01264 388 Gene3D - 249 350 - -
Csa03g01264 388 MobiDBLite consensus disorder prediction 121 143 - -
Csa03g01264 388 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 369 IPR044807 GO:0004842
Csa03g01264 388 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Csa03g01264 388 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Csa03g01264 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 110 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01264 K16277 DRIP; E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] - csv:101216620 777.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00303 Csa-Chr2:2083152 Csa03g01264 Csa-Chr3:9656058 1.07E-32 dispersed
Csa02g02714 Csa-Chr2:23640891 Csa03g01264 Csa-Chr3:9656058 3.76E-09 transposed
Csa06g00783 Csa-Chr6:6267380 Csa03g01264 Csa-Chr3:9656058 1.03E-09 transposed
Csa02g01153 Csa-Chr2:11233649 Csa03g01264 Csa-Chr3:9656058 6.81E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01264 Csa_Chr03 FPKM 20.033333 22.16173 4.153549 4.114909 6.346877 5.403375 7.549856 5.880426 4.315903 7.31118