Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01265 ATGGAGGTTAGCCGCAAAATGGTCAACATGCTGGAAACTGATCTCTGCCTCGGCCTTCCCGGCGGTGGCGCTGAGCCGGAGACTCCCAAAGCTAATGGAAAAAGAGGGTTCTCTGAAACTGTTGATTTGAAACTCAATATCCAATCTAAGCCAGGAGTTACCGTCGATCTCACTCCACAGAATAATGATACTTCAACTGATGAGGAGAGTCTCATAGCCTCTAAAGATCCTGCAAAGCCACCTGCCAAGGCACAAGTTGTGGGATGGCCACCCGTGCGATCCTACCGGAAGAATGCGATGTCCCAAAAGAGCTCTGAAGCCGGAGAAAAAGGCGGAAGCAGCGGCGGTTCAGCTATGTTTGTCAAAGTTTGTATGGATGGCGCGCCTTATCTGCGAAAGGTCGACCTGAAGATGTACAAAAGCTACCAAGAGCTCTCGAACGCCTTGGCCAAGATGTTCAGCTCCTTCACCATGGCCGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACTTATGAAGATAAGGATGGTGATTGGATGCTGGTTGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAAGGATCAGAAGCTATTGGACTTGCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTAA 714 48.18 MEVSRKMVNMLETDLCLGLPGGGAEPETPKANGKRGFSETVDLKLNIQSKPGVTVDLTPQNNDTSTDEESLIASKDPAKPPAKAQVVGWPPVRSYRKNAMSQKSSEAGEKGGSSGGSAMFVKVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9663140 9665773 - CsaV3_3G012650.1 Csa03g01265 522170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01265 237 Gene3D - 113 231 - -
Csa03g01265 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 230 IPR003311 GO:0005634|GO:0006355
Csa03g01265 237 MobiDBLite consensus disorder prediction 51 86 - -
Csa03g01265 237 ProSiteProfiles PB1 domain profile. 118 219 IPR000270 GO:0005515
Csa03g01265 237 Pfam AUX/IAA family 30 228 IPR033389 -
Csa03g01265 237 MobiDBLite consensus disorder prediction 18 37 - -
Csa03g01265 237 MobiDBLite consensus disorder prediction 51 68 - -
Csa03g01265 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 5 230 - -
Csa03g01265 237 SUPERFAMILY CAD & PB1 domains 114 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01265 K14484 IAA; auxin-responsive protein IAA - csv:101217325 450.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01105 Csa03g01265 CCT
Csa02g01105 Csa03g01265 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00313 Csa-Chr2:2122670 Csa03g01265 Csa-Chr3:9663140 9.13E-91 dispersed
Csa02g02232 Csa-Chr2:20037726 Csa03g01265 Csa-Chr3:9663140 2.75E-76 dispersed
Csa03g01265 Csa-Chr3:9663140 Csa07g01671 Csa-Chr7:17161995 7.87E-97 dispersed
Csa03g04540 Csa-Chr3:39564190 Csa03g01265 Csa-Chr3:9663140 1.14E-27 dispersed
Csa03g01265 Csa-Chr3:9663140 Csa03g01266 Csa-Chr3:9679911 5.75E-50 tandem
Csa01g02085 Csa-Chr1:17962388 Csa03g01265 Csa-Chr3:9663140 1.85E-55 transposed
Csa02g01105 Csa-Chr2:10798159 Csa03g01265 Csa-Chr3:9663140 4.08E-125 wgd
Csa02g01156 Csa-Chr2:11262930 Csa03g01265 Csa-Chr3:9663140 5.44E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g604 . Blo12g00354 . . Bpe04g00805 Bpe14g01226 . . Cmo08g01088 Cmo17g00186 Cma06g01344 Cma14g01774 Car06g01165 Car14g01596 . Cpe08g00306 . . . . . . . . Cla06g00625 Cam06g0664 Cec06g0668 Cco06g0674 Clacu06g0652 Cmu06g0645 Cre06g1413 . Cone3ag0696 . . Lsi05g01663 Csa02g01105 Chy05g00364 Cme06g00548 Blo02g00605 Blo07g00243 Bda11g00610 Bda13g00091 . Bpe13g00577 . . Sed02g1370 Cmo06g01355 Cmo14g01811 Cma08g01113 Cma17g00190 Car08g00996 Car17g00168 . . Bhi12g02259 Tan06g2466 Cmetu06g0764 . . . Lcy13g0327 Cla05g00490 Cam05g0534 Cec05g0546 Cco05g0546 Clacu05g0532 Cmu05g0504 Cre05g0572 Lsi09g01278 Csa03g01265 Chy06g00519 Cme05g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000184 9 5 7 6 9 5 10 5 6 6 4 5 11 6 6 10 5 9 3 5 6 6 6 6 6 6 6 7 6 3 190
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31177 PF02309 AUX_IAA 1.00E-81 CL0072 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01265 Csa_Chr03 FPKM 0.0 0.823437 0.0 0.695762 0.829323 0.0 0.0 0.462432 0.0 0.0