Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01269 ATGCAGACCCACATGTTTCTGAGTCAACATCAATGCTCAATCTTACGCCTTTCTCCCCCCTCCTCACTTCCTCGATTCCGTCGCAACATTTCGTTTTCCACTTCCAGCAGAGCCTTCCCACTCCACTTTTCATGGACCAACCACTTGGATTTTAATGCTTGTCCTCTCTTGATCAGTGGAGGGATATGGGAGGGGTGTTCTCAAAAGAAACATGATCGGGTACGGACTTCAATGTGTACAAGCAGCTCAACTGATCAGAATGCCAGTGGATATAGAGTTAACCCGAATATTTTTTCTCAGGCTATCCAAGCTAAGGTTGCGGTCAAAGTTGTATTTTCATGTTGCCTTTTAAGTTTGACACAAGTTACCTCTGTTAAATCTATAGCCAAAACTGTCATAGAGATATTCCCCTTTATCGTTCAAAATTTTGGAGGTAGCTTGCCATTTGCATGTGTATCAAATGCCTTGAACAAACCGACACCCCTTCAATTGGATGTATACCTGCCTGCTTTTCGAGATATCAGATGGAGTTTTGCACGACTGATATACCTATTCAACATTCAACTTGAGAGAAATGTTGGCACGTTCTTAGTGGTGCTCCTTGTGGCATGCATCTCATTCATTTTGATCGGTGGTTTCTTGTTCTTCAAGCTCAGAGGTAGCACTCAATCTCTGGAGGACTGCTTATGGGAAGCATGGGCATGTCTATGTTCATCATCTACTCACTTGAAACAAACAACACGAGTTGAACGAGTTATAGGCTTCATTCTTGCCATATGGGGCATATTATTCTACTCTCGTCTACTTAGCACAATGACAGAGCAGTTTAGGCATAACATGCAAAGGCTGAGGGAAGGTGCACAAGTTCAAGTTTTGGAATCTGATCACATCATCATTTGTGGTGTCAATAGTCATTTGACTTTTATACTGAAGCAGCTAAACAAATACCATGAATTTGCTGTTCGCTTAGGCACTGCAACTGCTAGGAGACAGAGAATTCTACTCATGTCAGATCTTCCAAGGAAACAAATGGACAAGTTAGCTGATAATATTGCGAAAGATCTTTACCACATTGATATTCTTACAAAGAGTTGTAGTCTCAGCTTAACTAAATCATTTGAAAGAGCTGCTGCCAGTATGGCACGAGCGGTAATCATACTGCCAACAAAAGGAGACCGGTATGAAGTTGATACAGATGCATTTCTCTCTGTTCTTGCACTTCAACCCATTGCAAATATGGACTCCATCCCAACTATTGTTGAGGTTTCTAGTTCCAACACATGTGAGCTCTTGAAGTCCGTCACAGGACTGAAGGTAGAGCCAGTGGAGAATGTTGCCTCTAAATTATTTGTCCAGTGTTCACGGCAAAAGGGACTCATAAAAATTTACAGACACTTGTTGAACTATCGGAAAAATGTATTTAATCTATTCAGTTCCCCCAATTTTGTTGGTCTAAATTATAAAGAATTACGCCAAGGATTTCATGAGGCAGTTGTGTGTGGTATCTATAGAAATGGGAAGATACACTTCCATCCAAATGATGATGAGATTTTGCAGCAAAATGACAAGATTCTGTTAATTGCACCTCTCCTTGGAGGACATAAGGGAACGGGTGGTCATACAAATGTGACCAAAGAAGGAAGTAATACCATTAAAAAACTGGAAAATATTAAAAACAATAATGTAGGTTTACTTGATTCTCTGGAAACAGATAAAAAGGGATTTGAGAATATCATCAAACATCCAACAAAACCTTCCTTCAAGGCTTCAAAGTGGACTGAAGGACCAAAAGAATGCATACTTTTGCTTGGTTGGCGCCCAGATGTGGTTGATATGATTGAAGAATATAATAACTATCTTGGACCTGGTAGTGTATTGGAAATTTTATCAGATGCATCATTTGAAGAAAGAGAGAGGGCTAATAAAGCTGCAGACCACAAGAATTTAAAAAATGTCAGAGTTTCTCACAGGATAGGAAATCCGATGGACTATGATACCTTAGAGGAAACTTTAATTAATATTAAGAGGTCTTTCAATAAAAATGAAGATGTTCCTTTGTCCATTGCGGTGATATCCGACAGAGAATGGCTTCTTGGGGATCCATCTAGGGCGGACAAACACTCAGTATATACTCTTCTCCTTGCTGAAAGTATCTGTAAAAAGCATGGAGTTAAGGTACAAAATCTTGTTGCGGAGATTGTTGACTCCAAATTGGGAAAACAAATAACCAGAATAAAACCTTCCCTGACATACATTGCAGCAGAGGAAATAATGAGTCTTGTCACAGCTCAAGTGGCAGAGGATAGTGAATTGAACGAAGTATGGAAAGATATTTTAAATGCTGAGGGTGATGAAATTTATGTGAAGGATATCTGTGGCTACATGAAACAAGGGGAGGATCTCTCATTTTCAGAACTTTCTGAAAGAGCACATCTAAAGCAAGAAGTTGCCATTGGTTATATTAAAAACAATAGGAAGGTAATCAATCCCATTCCCAAGTCTGAACCGCTTTCTCTTGAATTGACAGATTCGTTAATCGTTATATCAGAGCGTGAATAA 2559 39.59 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSSRAFPLHFSWTNHLDFNACPLLISGGIWEGCSQKKHDRVRTSMCTSSSTDQNASGYRVNPNIFSQAIQAKVAVKVVFSCCLLSLTQVTSVKSIAKTVIEIFPFIVQNFGGSLPFACVSNALNKPTPLQLDVYLPAFRDIRWSFARLIYLFNIQLERNVGTFLVVLLVACISFILIGGFLFFKLRGSTQSLEDCLWEAWACLCSSSTHLKQTTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQRLREGAQVQVLESDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNIAKDLYHIDILTKSCSLSLTKSFERAAASMARAVIILPTKGDRYEVDTDAFLSVLALQPIANMDSIPTIVEVSSSNTCELLKSVTGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLFSSPNFVGLNYKELRQGFHEAVVCGIYRNGKIHFHPNDDEILQQNDKILLIAPLLGGHKGTGGHTNVTKEGSNTIKKLENIKNNNVGLLDSLETDKKGFENIIKHPTKPSFKASKWTEGPKECILLLGWRPDVVDMIEEYNNYLGPGSVLEILSDASFEERERANKAADHKNLKNVRVSHRIGNPMDYDTLEETLINIKRSFNKNEDVPLSIAVISDREWLLGDPSRADKHSVYTLLLAESICKKHGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEIMSLVTAQVAEDSELNEVWKDILNAEGDEIYVKDICGYMKQGEDLSFSELSERAHLKQEVAIGYIKNNRKVINPIPKSEPLSLELTDSLIVISERE* 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9703742 9712586 - CsaV3_3G012690.1 Csa03g01269 522174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01269 852 Gene3D - 287 439 - -
Csa03g01269 852 SUPERFAMILY TrkA C-terminal domain-like 481 529 IPR036721 GO:0006813
Csa03g01269 852 Pfam Castor and Pollux, part of voltage-gated ion channel 443 530 IPR010420 -
Csa03g01269 852 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 21 852 - -
Csa03g01269 852 PANTHER ION CHANNEL POLLUX-RELATED 21 852 IPR044849 GO:0006811
Csa03g01269 852 SUPERFAMILY Voltage-gated potassium channels 178 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01269 - - - csv:101217088 1654.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01269 Csa-Chr3:9703742 Csa05g02162 Csa-Chr5:24641535 9.69E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g599 . . . . . . . . . . Cma06g01348 Cma14g01772 Car06g01169 Car14g01594 . Cpe08g00303 Cpe03g01483 . . . . . . . . . . . . . . . . Cone7ag0291 Cone4ag0286 Lsi05g01659 . . Cme06g00552 Blo02g00601 . . Bda13g00094 . . . . . Cmo06g01360 Cmo14g01808 . . . . . . . . . . . . . . . . . . . . . Csa03g01269 Chy06g00522 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010595 1 0 1 0 0 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01269 Csa_Chr03 FPKM 6.913043 6.937922 13.649356 15.407444 11.249382 8.089567 10.479564 1.399925 1.458351 0.96344