Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01270 ATGTATTCCCCAATCCGCCATTCCTCCTCTATTCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTTCATTACTCCGCCGCCGAAGCTCCCGACGCCGATGGCTACACCTGCTCCGCCAACCAAACTGCCAACCCATGTCAGGCCTATGTCTTCTACAGAGCCACCCCTCCCAATTTCCTCAATTTGGCTGCCATTGCTGACCTCTTCTGGGTCAGCCGCCTCCAAATTTCTCGTCCCAGCAACATCTCCGACTCCAACGCTACTTTCCCTCTCCTCTCCGGCCAACCTCTCTTCATTCCCATAACCTGCTCCTGCCACTCCGTCAACGCCTCCGTCAGTATCTCCTATGCTAATCTCTCCTACAAAATCAACGCCGGCGACAATTTCTGGCTCGTCTCCACCTCCAAATTTCAGAATCTCACCACTTTCCAATCCGTCGAAATCGCCAATCCCACTTTAATCGCAACCAATCTCTCCATCGGCGTCGACGTCGTTTTTCCCATCTTCTGCAAATGCCCTAATCCCACTCAACTCCGAAATCGGGTCAATTTCATGATCTCTTACGTGATTCAGCCCGCCGATACTCTGTCCTCCATAGCTTCAAGGTTCGGAGTACAAACGTCGGAAATCAGAGACGCGAATTGGCCAAACCCGCAACCGTTCGAGACAATTTTCATCCCAGTGAGTCGTCTTCCCAATTTGACACAGCCCATTGTGTTACCGCCGTCTCCGGAGCAGGCACCGGCGCCGGTGAGAGAAGATAAAAACAGAGTAGTGACAGGGCTGGCGATTGGGTTGGGGATTGTTGGGTTTTTGCTGATTTTGGCGGTGGGTTTGTTGGTTTTTGGAGTGGGGAAGAGGAGGAAGAATGAGAGGGAAATGGAGGAAAGATTTGAGAAACAGAGAGTGCAGGATGATGGGATTTGGAAAGCGAAAAGGAAGGAAATGGAGGTTGATTTAATGGCGGATGTGTCTGATTGTTTGGATAAATACAGAGTGTTTAAAATTGAGGAGCTTAATGAAGCGACGAATGGATTTAGCGAGAGTAGCTTGATTCAAGGATCGGTTTACAAGGGAACAATCGGTGGAGTTGAATTTGCAATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGGTAAACCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGCGTTGACCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGTTCTCTTTATTCATGGCTACACGAAACCCAAAAGCAGAAACTGAACTGGAGAATGAGATTGAGGATTGCGATCGATGTTGCTAACGGACTACTATACATCCACGAGCACACAAGGCCGCAAGTCGTTCACAAAGACATAAAAAGCAGCAACATTCTGCTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCGGGATGCAATGCCATAACTATGCACATTGTTGGGACTCAAGGCTATATAGCACCGGAATACATAGCCGATGGAGTCGTGTCGACGAAGATGGACATTTTCTCGTTCGGAGTTGTTCTGCTCGAGCTGATCTCTGGGAAGGAGGCCATTGACGACCAAGGAAATGCTCTATGGATGAGAGCCAGTAATGAATTTTTGGACGGAAAGGAGAAGGATAAGTTGGAGAGTCTGAGGAGTTGGATTGATGAAGCTCTTTTCGAGCAATCTTGCCCGATGGAGAGTTTGATGGATGCGATGAATGTGGCTGTTAGTTGCTTGCAGAAGGATCCAACAAAGAGGCCGAGCATGGTGGAGGTGGTTTATGCACTAAGCAAGACCGATGACGCCGTGTTCGATTTCTCTGATGATAATTTATCAGCTCCTCCCTTAACAGCTAGGTAA 1896 47.52 MYSPIRHSSSILFLFSFFFFFFFFHYSAAEAPDADGYTCSANQTANPCQAYVFYRATPPNFLNLAAIADLFWVSRLQISRPSNISDSNATFPLLSGQPLFIPITCSCHSVNASVSISYANLSYKINAGDNFWLVSTSKFQNLTTFQSVEIANPTLIATNLSIGVDVVFPIFCKCPNPTQLRNRVNFMISYVIQPADTLSSIASRFGVQTSEIRDANWPNPQPFETIFIPVSRLPNLTQPIVLPPSPEQAPAPVREDKNRVVTGLAIGLGIVGFLLILAVGLLVFGVGKRRKNEREMEERFEKQRVQDDGIWKAKRKEMEVDLMADVSDCLDKYRVFKIEELNEATNGFSESSLIQGSVYKGTIGGVEFAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCVDPEDATCYLIYEYVENGSLYSWLHETQKQKLNWRMRLRIAIDVANGLLYIHEHTRPQVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGKEAIDDQGNALWMRASNEFLDGKEKDKLESLRSWIDEALFEQSCPMESLMDAMNVAVSCLQKDPTKRPSMVEVVYALSKTDDAVFDFSDDNLSAPPLTAR* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9716725 9720433 - CsaV3_3G012700.1 Csa03g01270 522175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01270 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Csa03g01270 631 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 625 - -
Csa03g01270 631 ProSiteProfiles LysM domain profile. 188 234 IPR018392 -
Csa03g01270 631 PANTHER - 8 625 - -
Csa03g01270 631 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Csa03g01270 631 CDD LysM 188 216 IPR018392 -
Csa03g01270 631 ProSiteProfiles Protein kinase domain profile. 273 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01270 631 SUPERFAMILY LysM domain 188 220 IPR036779 -
Csa03g01270 631 SMART serkin_6 348 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01270 631 SMART LysM_2 189 229 IPR018392 -
Csa03g01270 631 Pfam Protein kinase domain 368 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01270 631 Gene3D LysM domain 187 229 IPR036779 -
Csa03g01270 631 Gene3D Transferase(Phosphotransferase) domain 1 414 622 - -
Csa03g01270 631 Pfam LysM domain 190 219 IPR018392 -
Csa03g01270 631 SUPERFAMILY Protein kinase-like (PK-like) 332 608 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01270 - - - csv:101217327 1198.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01480 Csa-Chr2:14202759 Csa03g01270 Csa-Chr3:9716725 3.39E-112 dispersed
Csa03g01270 Csa-Chr3:9716725 Csa06g02872 Csa-Chr6:24993032 1.43E-95 dispersed
Csa03g01270 Csa-Chr3:9716725 Csa06g02868 Csa-Chr6:24978876 4.09E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77980 PF00069 Pkinase 9.80E-40 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01270 Csa_Chr03 FPKM 99.742943 107.044205 19.393133 19.435009 174.721481 159.984024 164.844559 0.0 0.270646 0.0