Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01272 ATGGAGACGGGGCTCCGGCCCACTGCCACTCCCACTCCCACCCCCGCTACTACTCTTCTCCGGAAGTACCAATTAGGCCGCCTTCTCGGTCGTGGAAGTTTCGCCAAAGTCTATCAAGCAGTTTCCTTAGCCGATAACTCCACCGTCGCCATCAAAATCATCGACAAATCCAAAACCATCGGCGCTGTCATGGAGCGTTGCATAGTCCGGGAGGTTGCCGCCATGCGCCGCCTCGATCACCATCCAAACATACTCAAAATCCACGAAGTCATGGCGACAAAGTCCAAAATATACCTGGTGGTTGAATTCGCTGGCGGTGGCGAACTCTTGGCTAAAATCTCCCGCCGTGGGCGATTCACCGAAACCGTCGCGCGCCGGTATTTCCAACAACTCGTCTCGGCCCTTAAGTTCTGCCACGATAACGGCGTCGTTCACCGTGACGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAGTCTCTGATTTCGGTCTCTCTGCTTTACCTGAACAACTCAGAGACGGATTACTCCACACTTCTTGTGGAACTCCAGCGTACTCAGCGCCAGAAGTCATGACCTGTCGCAGTGGTAGCGGATACGACGGCGGAAAGGCTGACGCCTGGTCATGTGGAGTAATTTTATTCGTAATGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAATCTAGCGGCGATGTACAGAAAAATCCACAGGCGAGAATTTCAAATCCCTAATTGGGTATCGAAACCTGTCCGATTCCTAATATATCACCTCCTCGATCCGAATCCCAAAACGAGGATGAGCATTGAGGCGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCACTTGAAACAGGCCAATGAGAACCTACTGCAATCGATGAGGGATTATCGAATGGGAAAAGAGAGGGGAATTGGGGAAATGAATGCGTTCGATATAATTTCGATGTCTTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGACGGAGAGGAGAGCGGAGAGGAGGTATGCGTCGAGAGCGACGGTGATGGAGGTGGAGAAGAGGGTCAGGGAGATGGGCGTAGAGTTGGAGTATGAAGTGGAGGTGGGGGGAAAGGGAGGGTCGATCGGAATGGGGAAGAGGGGAGTGGTGGTGGTGGTGGAAGTGGTGGAGGTGGCAGTGGCATTAACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACACCATTGGAGGTGTTTTGAAGGCAAACTTCAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATTTGTAA 1302 51.84 METGLRPTATPTPTPATTLLRKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTIGAVMERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAGGGELLAKISRRGRFTETVARRYFQQLVSALKFCHDNGVVHRDVKPQNLLLDEQGNLKVSDFGLSALPEQLRDGLLHTSCGTPAYSAPEVMTCRSGSGYDGGKADAWSCGVILFVMLSGFLPFDDSNLAAMYRKIHRREFQIPNWVSKPVRFLIYHLLDPNPKTRMSIEALMQNPWFKKSLHLKQANENLLQSMRDYRMGKERGIGEMNAFDIISMSSGLDLSGLFETTERRAERRYASRATVMEVEKRVREMGVELEYEVEVGGKGGSIGMGKRGVVVVVEVVEVAVALTMVEVRVVKGGEEFEEHHWRCFEGKLQGFAVPWQRKCNL* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9724996 9726644 - CsaV3_3G012720.1 Csa03g01272 522177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01272 433 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Csa03g01272 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Csa03g01272 433 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01272 433 PANTHER SERINE/THREONINE KINASE 15 429 - -
Csa03g01272 433 Gene3D Transferase(Phosphotransferase) domain 1 107 306 - -
Csa03g01272 433 SUPERFAMILY Protein kinase-like (PK-like) 20 293 IPR011009 -
Csa03g01272 433 SMART serkin_6 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01272 433 Gene3D Phosphorylase Kinase; domain 1 19 106 - -
Csa03g01272 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 429 - -
Csa03g01272 433 Pfam Protein kinase domain 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01272 433 Gene3D Kinase associated domain 1, KA1 308 424 - -
Csa03g01272 433 Pfam NAF domain 312 366 IPR004041 GO:0007165
Csa03g01272 433 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01109 Csa03g01272 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01272 Csa-Chr3:9724996 Csa06g01610 Csa-Chr6:13852353 2.08E-125 dispersed
Csa04g01698 Csa-Chr4:16380699 Csa03g01272 Csa-Chr3:9724996 9.47E-09 transposed
Csa05g01714 Csa-Chr5:20371376 Csa03g01272 Csa-Chr3:9724996 3.56E-10 transposed
Csa02g01109 Csa-Chr2:10872284 Csa03g01272 Csa-Chr3:9724996 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77981 PF00069 Pkinase 1.40E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01272 K12761 - csv:101217555 800.045