Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01284 ATGCCAGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTGCAGAACACTGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGTCCGCCGAATCTGGAACACCAGAACATCAAATTTCGAAACCCCTCTTCCCCTCCGAGTAAAAACAGGGGTCGGAGAAGGAGCAGAGGTGGTCGGAAATCCGATCAGGGAGATGTGTTTATGAGGCCCAGTTCTCGGCCCTGCACGGTGGCACGTAAACCCGATGAACCTGAGTTTAACGCCGGAGCTATGGTGGCGAGTACTAATCCAAATGGTGGAATCATTAGTGGGATGCAAATGGGTTTTCGTAATTCAAGCAAGTCTTTGAGTTTTGCCCCAAGACCTGGATTTGGTCAAGTTGGAACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGAATCTGATTTGGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAAAGAGTTTACCATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTACTTATTAAGTTCGTTGCACGTGCAAATTTACACCATCTGGGTCAGTTTCTGGCGGGCAAGCGTGCTGATGCTCCACAAGAAGCTCTTCAGATACTGGACATTGTATTGAGAGAGCTTTCATCCAAAAGGTACTGTCCTATAGGGAGATCTTTCTTTTCTCCTGATATTAGATCACCTCAGCGGCTCGGTGATGGGCTAGAATCATGGTGTGGATTTTATCAGAGTATTAGACCTACTCAAATGGGACTGTCTCTGAACATAGATATGGCTTCAGCTGCGTTCATTGAGCCTCTCCCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCACGGCCACTGTCCGACTCCGATCGAGTAAAGATTAAAAAGGCTCTGAGAGGGGTGAAAGTTGAAGTAACACACCGTGGAAATGTTAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAGCCTACAAGAGAATTAGTATTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGCTTCACCATTCAGCATGCACATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTGGGGGGGCAAAGATATACAAAGAGATTGAATGAAAAGCAAATAACAGCACTTCTAAAAGTCACGTGTCAAAGACCTAGGGATCGAGAAAACGACATTTTGCAGACTGTCCAACATAACGCTTATGACAATGATCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAATTGGCTTCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTAAAATATCATGATACTGGTAAAGAGAAGGATTGTTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGTATCAACTTCTCTAGGAGCGTGCAAGAGAGCGTAGCTCGTGGGTTTTGTTCTGAACTTGCTCAGATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAATATACAATGCAAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTGTACCATGCTTCCATGAACAAGACTAAAGGAAAAGAGTTGGAGTTATTATTAGCTATTTTACCTGACAATAACGGGTCGCTTTATGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAGCACGTGTTCAAGATAAGCAAGCAATACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGTGCTACTTGTCTGGTCTGAAGGACTTCATAAGGCTCTACTTATCCAATAATGAAAACGATAAAATCACTTTGGATTCTAATGAGTTTTGTTTGCTTTTCTTCTTTTCCTCTTCGCTACCAATTCAATCTCAGATGGGTGGAAGAAACACCGTTCTTCTAGATGCTATCAGCTGCAGGATACCACTTGTGAGTGACATACCAACAATTATATTTGGAGCAGACGTGACCCATCCAGAGAATGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCAGGGCTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACTGTCAGTGGTGGCATGATCAGAAAGGAAATGGATGGTGCATATATTGCTTCTTCTTTGAATATTGATTTATATGGTGCCAATTATTGTCACAGGGATCTTCTGATTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGGATAATATTTTACAGGGACGGCGTGAGCGAAGGACAATTTTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCTGTAACATTCATTGTCGTACAAAAGCGACACCACACCCGATTGTTTGCCAACAACTATAGAGATAGAAGTAGCACAGACAAGAGTGGGAACATTTTACCTGGAACTGTAGTCGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGTCATGCTGGAATTCAGGGAACGAGTCGGCCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTCACTGCAGATGGAATTCAGTCGTTAACAAACAATCTTTGCTACACGTATGCAAGATGTACACGTTCAGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCGGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCGGCCAAGAGTACACGTGTCACCGGAGAATGTGGGGTTCGTCCTTTGCCAGCTCTAAAAGAAAACGTGAAGAGAGTAATGTTTTACTGTTAG 3159 42.89 MPVRQMKESSEQHLVIKTHLQNTVQKAPKSTQNGKGPPNLEHQNIKFRNPSSPPSKNRGRRRSRGGRKSDQGDVFMRPSSRPCTVARKPDEPEFNAGAMVASTNPNGGIISGMQMGFRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFTIKLVDEEDGVSGPKREREYKVLIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKCYLSGLKDFIRLYLSNNENDKITLDSNEFCLLFFFSSSLPIQSQMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRKEMDGAYIASSLNIDLYGANYCHRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRVTGECGVRPLPALKENVKRVMFYC* 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9816222 9822648 + CsaV3_3G012840.1 Csa03g01284 522189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01284 1052 CDD Piwi_ago-like 492 1010 IPR045246 -
Csa03g01284 1052 Gene3D - 735 1052 IPR036397 GO:0003676
Csa03g01284 1052 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 712 1051 - -
Csa03g01284 1052 Pfam Mid domain of argonaute 531 608 IPR032473 -
Csa03g01284 1052 ProSiteProfiles PAZ domain profile. 334 448 IPR003100 GO:0005515
Csa03g01284 1052 PANTHER PROTEIN ARGONAUTE 10 57 677 - -
Csa03g01284 1052 Pfam Piwi domain 718 1010 IPR003165 GO:0003676
Csa03g01284 1052 Pfam Piwi domain 623 677 IPR003165 GO:0003676
Csa03g01284 1052 ProSiteProfiles Piwi domain profile. 622 1011 IPR003165 GO:0003676
Csa03g01284 1052 MobiDBLite consensus disorder prediction 21 88 - -
Csa03g01284 1052 SUPERFAMILY PAZ domain 328 488 IPR036085 GO:0005515
Csa03g01284 1052 SMART PAZ_2_a_3 338 470 IPR003100 GO:0005515
Csa03g01284 1052 Pfam N-terminal domain of argonaute 138 272 IPR032474 -
Csa03g01284 1052 Pfam Argonaute linker 1 domain 282 331 IPR014811 -
Csa03g01284 1052 MobiDBLite consensus disorder prediction 21 54 - -
Csa03g01284 1052 CDD PAZ_argonaute_like 333 447 - -
Csa03g01284 1052 Gene3D paz domain 327 452 - -
Csa03g01284 1052 Pfam PAZ domain 360 464 IPR003100 GO:0005515
Csa03g01284 1052 SMART DUF1785_2 281 333 IPR014811 -
Csa03g01284 1052 Gene3D - 512 682 - -
Csa03g01284 1052 SMART Piwi_a_2 622 1011 IPR003165 GO:0003676
Csa03g01284 1052 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 677 - -
Csa03g01284 1052 SUPERFAMILY Ribonuclease H-like 508 677 IPR012337 -
Csa03g01284 1052 PANTHER PROTEIN ARGONAUTE 10 712 1051 - -
Csa03g01284 1052 Pfam Argonaute linker 2 domain 474 520 IPR032472 -
Csa03g01284 1052 SUPERFAMILY Ribonuclease H-like 718 1011 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00518 Csa-Chr1:3437238 Csa03g01284 Csa-Chr3:9816222 0 dispersed
Csa01g02097 Csa-Chr1:18192607 Csa03g01284 Csa-Chr3:9816222 0 dispersed
Csa03g01284 Csa-Chr3:9816222 Csa04g01292 Csa-Chr4:13093657 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01284 K11593 - csv:101221352 1925.6