Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01285 ATGCAGCTTATTAACTCTGAAGAAACGGTCGCCGACTCCTCGGAAACCGGTCTTGTGGAGTCAAGAAATTTGAAATCTTCTGAGTTGGTTTCGTTTGAGGATGACAATGGAAACGATGCTGATGATTCGGTTCTTGATGTATCGGGGAGAAACTTGGATTCCAATTTCTTGGAGGGTTCCAGCAGCTCAGTAAAGGGTCTGTATGTTTTTCGGAATGCGTTCAATTTGATCCCGAAATCAGTTGGTGACTTTAGAGAATTGAGAATGCTTAAGTTCTTTGGAAACGAGATTAACTTGTTTCCGTCAGAATTGAAGAACTTTGTGGGGTTAGAATGCTTGCAGGTGAAGTTATCCTCACCGGGTTTTGGTGGTTTATCATTGCACAAACTGAAGGGTCTGAAGGAGCTTGAGCTATCGAAGATTCCTCCTAAGCCATCCTCCTTTCCAATTCTTAGCGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCTCAGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTGGATCTCTCATTTAATAAGCTGAAGAGCCTTCCATCAGAAATAGGTTATTTGAACTCTTTGATATCCTTGAGAGTTGCCAATAACAAATTGGTGGAACTGCCTCCTGCTTTGTCTTCCCTGCAAAAGCTGGAGAACTTGGATCTCTCAAGTAATAGGTTAACATCATTGGGGTCTCTTGAACTTGTATCTATGCATAGCCTTAGAAACTTGAATTTACAGTACAATAAATTACTGAAAAGCTGTCAGATACCCTCCTGGATATGCTGTAATTTTGAAGGAAATCTTGAATATGATACTGCCAATGAAGAATGGATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCGATCAAGACAATGAGAATAGTTTTCCTCTTAAAGGTATGCGTAACATTTCATCAAACCTATTAATGGGACCTTCAACGAATAGTAGATCCTTTGCATCTAAAAGATCAGGTAAGCGATGGCGGAGACGGCATTATTTACAGCAGAAAGCACGCCAGGAACGTTTGAACAGCAGCAGGAAGTGGAAAGGAGTAGATCATCACACTGAAGTAAAGATCCATGAAAATCAAGAACCTGAGAGGCTTGATTCTGCTTCTATTTCTGAAACTACAGTTGGAGATTCATCGGCTATTGATGAATTATTTGATAGTAAAGAAACTTGTGATGTGGGAGCTGAAAGGGAAAATCATATCGAGAGCCATGAGAATGACAATTTTGATCCCAAAAAGGAATTTCCAGTGGAGGATTGTTCAAGCATCTGTGATGCTGCTGCAGAAACAATGACAAGGGATGAAAATGAATGTTGTGAGACTAGCAAGACTTTGCCACTGACAGGAAATGGAGCACATGACCAAGAAGGGTCATCTTCACAAGTATCAAAGGATAATGCTAAGTTGAAAAGATGTTCTGAGAAGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGCCAGTTGAATACAGCTCAAGTTTATCTTGCAAGTACAATAGTACCTCTTTTTGCAACGTGGAGGATTATTTGCCAGATGGATTTTATGATGCTGGACGTGATCGCCCCTTCATGCCATTAAGGAATTATGAGCAGAATTTCCATCTTGATTCACGTGAAGTCATTATTGTTAACAGGGAACACGATGAAGTATTAGATTCTATAACAATAGCTGCCAAGTCATTGGTACTCCGTCTAAAGCAGATTAACCAGCTAACCCAAGAAAGAGATCAAGTTATTGATGATGTGTATATTGCACAGTTACTTGCTTTATTTGTATCCGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAGAGTTGTTTCTGGTTCAAAGTATCAAAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGGATAATCTTACTTCGTCCACCAAATTGACGGTGGATAATTATGAGGATATTCTTTTTACCGATATCTGTGAGAAGTCTCTTCGTTCTATTAAAGCTAGTCGAAATTCCATCATAGTTCCTCTGGGAGCTTTGCAGTTTGGGGTGTGCAGACATAGAGCTTTGCTACTTAAGTATTTGTGTGATCGTATGGAGCCTCCAGTACCTTGCGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAACGTGATCTTAGTGCAAAGAGGTAATACTTTGGTTCGAATGGTTGTTGATGCATGCCGACCAAACGATATACGAGAAGAAGCAGATCCTGAATATTTTTGTAGGTACATACCTCTCAGTCGTGCCAAACTTCCTATTTCTTTTGGGGTGACATCCAGTCCAGGGATTTCTTTTCCCTCTCTTTCCAATTGTGATGAGATTGAGAAGGCTCCTTCTAGTTCTGTAATAAAATGCAAACTTGCGTCAGTTGAGGCTGCAGCAAAGTTACGGAAACGTGAAGTTTGTGAATCTTCATTTGAAGAAATAAGAAACTTTGAATTCAGTTGCTTAGGTGAAGTCAGAATTCTGGGTGCTTTGAAACACTCATGCATAGTTCAGATGTATGGACATCAGATATCTTCTGAATGGATTCCTTCTGAAAATGGAAAGCCAAAGCGTCGATTACTTAGGTCTGCAATTTTCTTAGAGCATGTTAAAGGGGGATCTTTGAAGAGCTACATGGACAAGTTGTACAAAGCTGGGAAAGAACATGTTCCAATGGATTTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGAGACATCAAAAGTGAAAATATTTTGATGGATTTTGATGAAAAATCTGATGGAGTTCCCATCGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGTATTGCTCATACTGGAATACCGCCTCCTGATGTTTGTGTTGGAACACCCCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCACATGTTTATGGACTGGAAGTAGATATTTGGTCGTTTGGATGTCTGTTATTGGAACTGCTGACCTTGCAGATTCCGTTCTTGGGGCTTACAGAATTGCAGATCTTCGATCATCTTCAGATGGGTAAAAGACCAGAATTGGCAGGTGACCTTGAGGAGGAATTGGGAACTATAAAGCAAAGCACGATGTCTCAATCATCAGTTCAAGAATCAGAGGGTCAAGAAAAAGACCAAGAAACTAAAGCCCTGTTGATTGACTTGTTTCGTAAGTGTACTCAAGAGAACCCGAACGATAGACCAACAGCTGAAGAACTCCACAGAATTTTGCTGGAGCACACAGTCAAAGTTAAATCATTACAAGAACTAGCTACATGA 3396 40.61 MQLINSEETVADSSETGLVESRNLKSSELVSFEDDNGNDADDSVLDVSGRNLDSNFLEGSSSSVKGLYVFRNAFNLIPKSVGDFRELRMLKFFGNEINLFPSELKNFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKLKSLPSEIGYLNSLISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLRNLNLQYNKLLKSCQIPSWICCNFEGNLEYDTANEEWISSTVEMDVYEATDQDNENSFPLKGMRNISSNLLMGPSTNSRSFASKRSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHTEVKIHENQEPERLDSASISETTVGDSSAIDELFDSKETCDVGAERENHIESHENDNFDPKKEFPVEDCSSICDAAAETMTRDENECCETSKTLPLTGNGAHDQEGSSSQVSKDNAKLKRCSEKELDNPKPCKSRKPVEYSSSLSCKYNSTSFCNVEDYLPDGFYDAGRDRPFMPLRNYEQNFHLDSREVIIVNREHDEVLDSITIAAKSLVLRLKQINQLTQERDQVIDDVYIAQLLALFVSDHFGGSDRSAMVEKTRRVVSGSKYQKPFVCTCSTGDRDNLTSSTKLTVDNYEDILFTDICEKSLRSIKASRNSIIVPLGALQFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVQRGNTLVRMVVDACRPNDIREEADPEYFCRYIPLSRAKLPISFGVTSSPGISFPSLSNCDEIEKAPSSSVIKCKLASVEAAAKLRKREVCESSFEEIRNFEFSCLGEVRILGALKHSCIVQMYGHQISSEWIPSENGKPKRRLLRSAIFLEHVKGGSLKSYMDKLYKAGKEHVPMDLALHVARDVASALVELHSKHIIHRDIKSENILMDFDEKSDGVPIVKLCDFDRAVPLRSLLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPHVYGLEVDIWSFGCLLLELLTLQIPFLGLTELQIFDHLQMGKRPELAGDLEEELGTIKQSTMSQSSVQESEGQEKDQETKALLIDLFRKCTQENPNDRPTAEELHRILLEHTVKVKSLQELAT* 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9835135 9842747 - CsaV3_3G012850.1 Csa03g01285 522190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01285 1131 PRINTS Leucine-rich repeat signature 183 196 - -
Csa03g01285 1131 PRINTS Leucine-rich repeat signature 226 239 - -
Csa03g01285 1131 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1120 - -
Csa03g01285 1131 SMART LRR_typ_2 226 249 IPR003591 -
Csa03g01285 1131 SMART LRR_typ_2 203 225 IPR003591 -
Csa03g01285 1131 SMART LRR_typ_2 180 201 IPR003591 -
Csa03g01285 1131 SMART LRR_typ_2 250 276 IPR003591 -
Csa03g01285 1131 SMART LRR_bac_2 180 199 - -
Csa03g01285 1131 SMART LRR_bac_2 203 222 - -
Csa03g01285 1131 SMART LRR_bac_2 226 245 - -
Csa03g01285 1131 MobiDBLite consensus disorder prediction 462 485 - -
Csa03g01285 1131 SUPERFAMILY Protein kinase-like (PK-like) 788 1116 IPR011009 -
Csa03g01285 1131 SUPERFAMILY RNI-like 56 272 - -
Csa03g01285 1131 MobiDBLite consensus disorder prediction 322 345 - -
Csa03g01285 1131 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Csa03g01285 1131 Gene3D Ribonuclease Inhibitor 20 291 IPR032675 -
Csa03g01285 1131 SMART serkin_6 794 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01285 1131 Pfam Protein kinase domain 807 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01285 1131 MobiDBLite consensus disorder prediction 322 336 - -
Csa03g01285 1131 Gene3D Transferase(Phosphotransferase) domain 1 792 1130 - -
Csa03g01285 1131 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Csa03g01285 1131 SMART LRR_sd22_2 226 247 - -
Csa03g01285 1131 SMART LRR_sd22_2 180 205 - -
Csa03g01285 1131 Pfam Ethylene-responsive protein kinase Le-CTR1 673 750 - -
Csa03g01285 1131 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g01285 1131 ProSiteProfiles Protein kinase domain profile. 794 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01285 1131 MobiDBLite consensus disorder prediction 376 395 - -
Csa03g01285 1131 MobiDBLite consensus disorder prediction 462 490 - -
Csa03g01285 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Csa03g01285 1131 PANTHER BNAC08G43810D PROTEIN 65 1120 - -
Csa03g01285 1131 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01285 - - - csv:101218031 2229.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01285 Csa-Chr3:9835135 Csa03g04310 Csa-Chr3:37721055 4.52E-22 dispersed
Csa03g01285 Csa-Chr3:9835135 Csa02g02001 Csa-Chr2:18601356 1.29E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77982 PF00069 Pkinase 6.60E-37 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01285 Csa_Chr03 FPKM 80.896683 79.513161 70.872063 65.041504 224.857269 284.329956 223.968948 7.044001 7.417634 6.583994