Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01292 ATGGCTGTTCTCGACAAGGATCCAAGAGAGGAAGTGATTCAGGCATGGTTTATGGATGACAGTGATGAGGACCAGAGGCTTCCTCATCACCTTGAACCAAAGCAATATGTATCCTTACAGAAACTTGATGAACTTGGAGTTCTGAGCTGGAGGCTAGATGCTGACATATATGAAACAGATGAGGAATTGAAGAAAATACGCCATGATCGTAATTACTCCTACATGGACTTCTGCGAGGTCTGCCCAGAAAAGCTTCCTAATTACAATGAGAAGATTAAAAACTTTTACGAGGAACACCTTCACACTGATGAGGAGATCCGTTATTGTGTGGCTGGAAGTGGTTACTTTGATGTTAGAGATCTGAATGACAAATGGATTCGCATTTGGGTAAAGAAGGGAGCAATGATTGTCTTGCCTGCTGGAATTTATCATCGCTTTACTCTGGATTCTGACAATTACATCAAGGCTATGCGACTCTTTGTTGGTGATCCTGTCTGGACTCCTCACAACCGTCCCAATGATCATCTTCCAGCAAGGAAGGAGTATGTCAAAAGTTTTGTGGAGAAGGAAGCTAGTATCCAAGCCGTTAACGCTGCAGCTTGA 603 43.12 MAVLDKDPREEVIQAWFMDDSDEDQRLPHHLEPKQYVSLQKLDELGVLSWRLDADIYETDEELKKIRHDRNYSYMDFCEVCPEKLPNYNEKIKNFYEEHLHTDEEIRYCVAGSGYFDVRDLNDKWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYVKSFVEKEASIQAVNAAA* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9877596 9881390 - CsaV3_3G012920.1 Csa03g01292 522197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01292 200 Gene3D Jelly Rolls 3 189 IPR014710 -
Csa03g01292 200 CDD cupin_ARD 39 168 IPR004313 GO:0010309
Csa03g01292 200 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 1 6 198 - -
Csa03g01292 200 Pfam ARD/ARD' family 14 168 IPR004313 GO:0010309
Csa03g01292 200 SUPERFAMILY RmlC-like cupins 14 186 IPR011051 -
Csa03g01292 200 PANTHER ACIREDUCTONE DIOXYGENASE 6 198 IPR004313 GO:0010309
Csa03g01292 200 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 13 176 IPR027496 GO:0016491|GO:0019509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01292 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - csv:101222292 423.705
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01124 Csa03g01292 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01124 Csa-Chr2:11016700 Csa03g01292 Csa-Chr3:9877596 2.77E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01292 Csa_Chr03 FPKM 10.471735 13.859797 2.112775 1.899321 0.430887 0.110261 0.25514 4.584609 4.180243 3.871668