Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01296 ATGGGTAATGCAGATTTTGAATGCCCTCATAGAGTAGCCATTCCTCCTAAGAAGCCCTTCTTAGACTCCTTAGCTTCTAATCTCAAAGAAACCTTCTTCCCTGATGACCCTTTCAAACAATTCAAAAACCAACCTTTACCCACTCAGATCTTTCTATGGCTTAAATACTTCATCCCCATCCTCAATTGGGCTCCTCATTACACTTTGGACTTCTTTAAAGCTGACCTTGTTGCTGGTATCACCATCGCTAGTTTAGCAGTCCCTCAGGGTATTAGCTATGCTAATCTCGCAAGCATTCCTCCTATCATTGGACTTTATTCAAGTTTCGTACCTCCGTTGATATACGCCATGCTTGGAAGCTCGAAAGATATAGCGGTGGGGACAGTGGCGGTAGCATCGTTGCTTATGTCTGCCATGTTGGGGAAGGAAGTCAACCCCGTGGAGCATCCGAAGGAATATGTTCAATTGGTTTTTACTGCAACTTTCTTCGCAGGAGTTTTCCAAGCTTCTCTTGGATTTCTAAGATTAGGGCTTATTGTGGACTTTTTGTCACATGCAACAATAGTAGGGTTCATGGGTGGTGCAGCAACGGTGGTCTGTCTTCAGCAATTAAAAGGCATAACTGGATTGGTTCATTTTACACATGAGACTGATATTGTATCCGTTATGCGCTCCCTTTTCACTCAAGTTCACAAGTGGAGATGGGAAAGTATTGTATTGGGTTGTTGTTTTCTCTTCTTTCTCCTCCTCACAAGATATTTGAGCAAGAAGAAATCAATCTTCTTTTGGATAAGTGCATTGGCGCCTTTAACTTCGGTAATCTTGGGAAGTCTTCTCGTTTACTTAACCCACGCTGAAAAACATGGCGTTCAAGTGATTGGGAGTTTGAAGAAAGGGTTGAATCCCCCTTCTGCATCTGATTTAGTATTTGGATCCCCTCATCTCGCCATTACTATCAAAACAGGGATCATCATCGGAATCATAGGCCTCGCTGAAGGGGTTGCAGTGGGGAGGAGTTTTGCTGCATTTAAGAATTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTATTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGCCCTTTCTCGAGGACTGCAGTGAATTTCAATGCAGGATGTAAAACTGCGGTTTCGAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCACTATACACCCCTGGTGGTGCTTTCTGCCATAATCATCACTGCTATGCTTGGCCTAATCAATTATGAAGAAGTAATCCACCTTTGGAAAATTGACAAATTTGACTTTGTCGTCTGCCTTGGTGCATATATCGGTGTTGTCTTTGGCAGCGTTGAAACAGGCTTGATTGTTGCGATTACACTCTCTTTGTTAAGGGTGCTTCTCATCATGGCGAGGCCAAGAACTTTAGTACTAGGCAATATTCCCAACTCCACAATTTACAGAAGCGTTGATCAATACCCAACAGCCAACCGTGTGCCTGGTATTCTCATCCTTCAACTGGAGGCCCCAATCTACTTTGCCAACTCAAACTACCTAAGAGAAAGGCTTTCAAGGTGGATTACAGACGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATTTCCGGCGTAAGTAGCATCGACTCAAGTGGAATCAGCATGCTTGAAGAGCTTAAGAAGACTACTGAAAGAAAGGGTCTCAAACTTGTACTTTGCAATCCAAGAAGTGAAGTGATAAAAAAGTTACACGAGGCAAATTTCATCGAGGCGATCGGACAAGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTCCACACTTGCAAGCCAAATCATGTTGCTGCTGAATTAAATTCACCCGTCTAG 1941 42.92 MGNADFECPHRVAIPPKKPFLDSLASNLKETFFPDDPFKQFKNQPLPTQIFLWLKYFIPILNWAPHYTLDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDIAVGTVAVASLLMSAMLGKEVNPVEHPKEYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGITGLVHFTHETDIVSVMRSLFTQVHKWRWESIVLGCCFLFFLLLTRYLSKKKSIFFWISALAPLTSVILGSLLVYLTHAEKHGVQVIGSLKKGLNPPSASDLVFGSPHLAITIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIIGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSAIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIMARPRTLVLGNIPNSTIYRSVDQYPTANRVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDISGVSSIDSSGISMLEELKKTTERKGLKLVLCNPRSEVIKKLHEANFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNHVAAELNSPV* 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9914975 9920373 + CsaV3_3G012960.1 Csa03g01296 522201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01296 646 PANTHER BNAA04G05880D PROTEIN 4 641 IPR030311 GO:0008272|GO:0009507|GO:0015116
Csa03g01296 646 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Csa03g01296 646 Pfam STAS domain 504 622 IPR002645 -
Csa03g01296 646 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Csa03g01296 646 TIGRFAM sulP: sulfate permease 59 622 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa03g01296 646 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Csa03g01296 646 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Csa03g01296 646 Pfam Sulfate permease family 72 451 IPR011547 GO:0016021
Csa03g01296 646 Gene3D STAS domain 483 628 IPR036513 -
Csa03g01296 646 PANTHER SULFATE TRANSPORTER 4 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01296 Csa-Chr3:9914975 Csa04g01847 Csa-Chr4:18135773 0 dispersed
Csa03g01296 Csa-Chr3:9914975 Csa07g01694 Csa-Chr7:17436452 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01296 K17471 - csv:101203205 1230.7