Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01297 ATGCCATGTCCCATTAAACCTCCTCGAGACATGAAAACCTCAACCTCCCTTCTCCCAAGTGCTCTCCTCCTCATCTCTATCTTCACCCTCCTCTTCCAACCTTCCCATCAACAAACTCCGTCGCCACCTCCGCCATTTCTCCCGAACCCCAGACTTCTTAAGGCCTACACCGCTCTCCAAGCTTGGAAACATGCCATCACTGAAGACCCATCTAACTTCACTGCCAATTGGTATGGCCCCGACGTCTGCAACTACTCCGGCGTTTTCTGCGCCCCCGCCCTCGACGACCCCGACATCCGCACTGTCGCTGGGATCGACCTCAACCATGGCAACATCTCGGGCACCCTGCCTGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCATATCAACTCCAATCGCTTCTGCGGCACCATCCCCAATTCCTTCCGCTGCCTCACTCTACTCTTCGAACTCGATATCAGCAACAATGACTTCTCCGGCGAATTTCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAGTTCCTCGACATTCGATTCAATAAATTCAGCGGCGATGTCCCTTCTTCCCTATTTGAATTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAATTTTTCCTTACCGGAAAACATCGGCAACTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAATATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAACACCACACTCAATGAAATTATAATCACGGGCAGTGGGTTGATTGGGTGTTTGCCGTCGGAAATAGGGTCGTTGAGCAATCTCACTGTCTTCGACGTCAGCGATAATAATCTCGTCGGACCGTTACCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTTAATGTGGCACATAACCAATTATCCGGCGAAATTCCGGCGAGTATTTGCTCGCTGCCGAAATTGCAAAACTTCACATTCTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTTTGCTTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGATAGGCCATTCCAACGTTCGCCGGAAGAATGCAAAGCTTTCTACTCTAACCCTGTTGATTGCAGCGTCTTTGGATGTACCCTTCGGCCACCACCACCGCCGCCGCCACCTTATTAG 1161 49.96 MPCPIKPPRDMKTSTSLLPSALLLISIFTLLFQPSHQQTPSPPPPFLPNPRLLKAYTALQAWKHAITEDPSNFTANWYGPDVCNYSGVFCAPALDDPDIRTVAGIDLNHGNISGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFSGDVPSSLFELKLDALFINNNDFNFSLPENIGNSPVSVLVFANNNINGCLPSSISNMNTTLNEIIITGSGLIGCLPSEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTFSYNFFCSEPPVCLKLQASDDQKNCLPDRPFQRSPEECKAFYSNPVDCSVFGCTLRPPPPPPPPY* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9923062 9924541 + CsaV3_3G012970.1 Csa03g01297 522202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01297 386 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 24 382 - -
Csa03g01297 386 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Csa03g01297 386 Pfam Leucine rich repeat N-terminal domain 57 90 IPR013210 -
Csa03g01297 386 Gene3D Ribonuclease Inhibitor 220 360 IPR032675 -
Csa03g01297 386 Gene3D Ribonuclease Inhibitor 55 218 IPR032675 -
Csa03g01297 386 SUPERFAMILY L domain-like 55 337 - -
Csa03g01297 386 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02065 Csa-Chr1:17694260 Csa03g01297 Csa-Chr3:9923062 5.13E-149 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa06g00076 Csa-Chr6:488593 4.37E-132 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa02g00136 Csa-Chr2:948141 8.93E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01297 - - csv:101218509 736.487