Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01297 ATGCCATGTCCCATTAAACCTCCTCGAGACATGAAAACCTCAACCTCCCTTCTCCCAAGTGCTCTCCTCCTCATCTCTATCTTCACCCTCCTCTTCCAACCTTCCCATCAACAAACTCCGTCGCCACCTCCGCCATTTCTCCCGAACCCCAGACTTCTTAAGGCCTACACCGCTCTCCAAGCTTGGAAACATGCCATCACTGAAGACCCATCTAACTTCACTGCCAATTGGTATGGCCCCGACGTCTGCAACTACTCCGGCGTTTTCTGCGCCCCCGCCCTCGACGACCCCGACATCCGCACTGTCGCTGGGATCGACCTCAACCATGGCAACATCTCGGGCACCCTGCCTGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCATATCAACTCCAATCGCTTCTGCGGCACCATCCCCAATTCCTTCCGCTGCCTCACTCTACTCTTCGAACTCGATATCAGCAACAATGACTTCTCCGGCGAATTTCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAGTTCCTCGACATTCGATTCAATAAATTCAGCGGCGATGTCCCTTCTTCCCTATTTGAATTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAATTTTTCCTTACCGGAAAACATCGGCAACTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAATATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAACACCACACTCAATGAAATTATAATCACGGGCAGTGGGTTGATTGGGTGTTTGCCGTCGGAAATAGGGTCGTTGAGCAATCTCACTGTCTTCGACGTCAGCGATAATAATCTCGTCGGACCGTTACCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTTAATGTGGCACATAACCAATTATCCGGCGAAATTCCGGCGAGTATTTGCTCGCTGCCGAAATTGCAAAACTTCACATTCTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTTTGCTTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGATAGGCCATTCCAACGTTCGCCGGAAGAATGCAAAGCTTTCTACTCTAACCCTGTTGATTGCAGCGTCTTTGGATGTACCCTTCGGCCACCACCACCGCCGCCGCCACCTTATTAG 1161 49.96 MPCPIKPPRDMKTSTSLLPSALLLISIFTLLFQPSHQQTPSPPPPFLPNPRLLKAYTALQAWKHAITEDPSNFTANWYGPDVCNYSGVFCAPALDDPDIRTVAGIDLNHGNISGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFSGDVPSSLFELKLDALFINNNDFNFSLPENIGNSPVSVLVFANNNINGCLPSSISNMNTTLNEIIITGSGLIGCLPSEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTFSYNFFCSEPPVCLKLQASDDQKNCLPDRPFQRSPEECKAFYSNPVDCSVFGCTLRPPPPPPPPY* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9923062 9924541 + CsaV3_3G012970.1 Csa03g01297 522202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01297 386 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 24 382 - -
Csa03g01297 386 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Csa03g01297 386 Pfam Leucine rich repeat N-terminal domain 57 90 IPR013210 -
Csa03g01297 386 Gene3D Ribonuclease Inhibitor 220 360 IPR032675 -
Csa03g01297 386 Gene3D Ribonuclease Inhibitor 55 218 IPR032675 -
Csa03g01297 386 SUPERFAMILY L domain-like 55 337 - -
Csa03g01297 386 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01297 - - - csv:101218509 736.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02065 Csa-Chr1:17694260 Csa03g01297 Csa-Chr3:9923062 5.13E-149 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa06g00076 Csa-Chr6:488593 4.37E-132 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa02g00136 Csa-Chr2:948141 8.93E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00136 CCT 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 62.7 1.7e-45 181.4
Csa07g00490 . 42 371 Leucine-rich Repeat extension Gene Families AT1G62440 58.2 6.8e-42 169.5
Csa01g02065 CCT 53 220 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 2.2e-40 164.5
Csa06g00076 . 56 225 Leucine-rich Repeat extension Gene Families AT1G62440 52.4 3.3e-36 150.6
Csa02g00136 CCT 40 423 Leucine-rich Repeat extension Gene Families AT4G13340 72.7 2.9e-66 250.4
Csa01g02065 CCT 24 395 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 2.3e-63 240.7
Csa07g00490 . 42 372 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 1.9e-41 167.9
Csa06g00076 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.2 2.5e-41 167.5
Csa06g00075 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-40 164.9
Csa06g00077 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-40 164.9
Csa06g00073 . 33 227 Leucine-rich Repeat extension Gene Families AT4G13340 56.4 7.5e-38 156.0
Csa02g00136 CCT 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 1.6e-76 283.9
Csa01g02065 CCT 21 390 Leucine-rich Repeat extension Gene Families AT3G24480 73.9 3.1e-69 259.6
Csa07g00490 . 42 386 Leucine-rich Repeat extension Gene Families AT3G24480 58.4 6.6e-43 172.2
Csa06g00076 . 26 400 Leucine-rich Repeat extension Gene Families AT3G24480 51.9 5.6e-42 169.1
Csa06g00075 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.0e-39 160.6
Csa06g00077 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.0e-39 160.6
Csa06g00073 . 33 402 Leucine-rich Repeat extension Gene Families AT3G24480 50.5 2.2e-38 157.1
Csa03g01297 . 25 379 Leucine-rich Repeat extension Gene Families AT3G22800 66.1 3.9e-53 206.1
Csa07g00490 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 9.0e-50 194.9
Csa01g02065 CCT 37 395 Leucine-rich Repeat extension Gene Families AT5G25550 62.3 2.3e-39 160.2
Csa02g00136 CCT 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 60.2 1.5e-38 157.5
Csa03g01297 . 37 375 Leucine-rich Repeat extension Gene Families AT5G25550 65.1 2.1e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01297 Csa_Chr03 FPKM 0.141205 0.379278 7.390246 7.306766 14.376919 10.891114 14.081781 0.855138 0.926484 0.796049