Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01300 ATGGCAACCTTAATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTAACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTAATTGAAGAGGATGCAGACTCCTTTGCCAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGTGGAACTTCGCCATGCACATAAAGCCATGGCTCAAGCCTTTGACAACCAAATGCCTCCTTTTATGTTTTCCGATGAGTCTTCTGTTTCAGAAGCTGAATCCCACACGCCAGAAATCCACCTCCCAAACCATGCACTGCATGCCAAAGATGACTTGCACAAGGAATCGGGGAGTTCTTCGTCAACAAACCAACATCCATTGAGAATGAAAGGAGATGGTGCTGGGGAATCTAATTCTTGCGTAAGTAAAGGAGGTCTGAAACAGCTCAATGAGATGTTTGCATCAAGAAAAAATGGGCCAGAAACTTTAGAGGTTAGTGAGGGAAGCATTGGAACGCAATCAGTTTTTCATGAAGGCGAATCTGATCCTTCTCAATTATCAAGGCAAATTAATGATCACGACTCTCAGGTCCTGTGTGAGTCAGTCTCAGAAAGTGATGAAAAATTGGATGCTGAAATTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTCAAATACCAGAATTCTCTGGAGAAGTTATCCAGCTTGGAGAAAGAACTTAGTTCTGCTCAAAAAGATGCTGGTGGACTTGACGAAAGAGCAAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATTTGAAAGCAGAGAAGAATTCTGGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAAGCTATTAGCTGTAACCCAACAAGATGCTGAAGGACAAAATGAGAGAGCTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTCCAGATTAGAATCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAACAAAATATCTCTTTCTGAAGATTATGCAAGGATGCTTGATGAACAAATGAATAGTTCAGAAGCTGAAGTGAAAGCACTGAAGAGATCTCTTGATGAACTTAACGAAGAGAAGGAAATTGCATCTCGCAATTATGAGCAGTGCTTGGAAAAAATTGCCAAGATGGAAACTGAAATATCTTATGCTCAAGATGATGCCAAACGTCTGAAAGGCGAACTTGTGATGACTAATGCAAAATTGGAGACGACGGAAGAAAGGTGTGCTCATTTGGAGAAGTCGAACCATTCGCTTCAGTTCGAGGCAGACAAACTTGTACAGAAGATTGCCATTAAGGATCGGGAGCTTGCTGAAAAGCAAGATGAGTTGAAAAAATTGCATAATTTAATGAATGAGGAGCAATCACGATTTGTACAAGTTGAGAAAACTCTTCACACTCTGCAGAAGTTACATTGTCAGTCTCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGGATGGAGGAAGAGCTTCAACGAGTTAAGGATGAAAACAAAATGTTGAATGAATTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGACCAATTATCTGGCTTGAAGGAGATAAAAGAGAAGCTTGAAGAGGTGGTTTCCCAAAAAGAAGAGCAGAGCAACTTGCTTGAGAAAGAGATCTATCATTTGAGAGAAGAAATTAAAGGCTTGAGTGGAAGATACCAGGGTATAATGAGACAATTGGAGGCAGTAGGATTGGATCCGCACTCCCTTGAATCCTCTGTGAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAAGGACAGGAACAAGATCGAAGCACTTTATGAAAAACTCAGTTATATGGATGCACTTGCAAAGGAAAATTCGAATCTCAAGGTATCTCTGGCTGAATTGAATGCTGAACTGGAGAAGATAAGGGAGAAAGTCAAGGAATCCCAGGAGGTTTCCCAATTTACCCAGGGAGAAAAAACTGCTCTTGTTGCAGAGAAATCTTCCTTGCTTTCACAACTGCAGAATGTAACTGAGAATATGATGAAACTTTTAGAGAAGAACACATTGCTGGAAGCCTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGATTAAGGGCAAAAACAAAGGGCTTAGAAGAATTTTGCCAGTTGCTGAAGGATGAGAGATCCAATCTCTTGAATGAAAGAGGTGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTTGGAAACCTGGAAAAGAGGTTTACGAATCTAGAAGAAAAATATGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTGGAAGAATTGAGATTTTCCCTTCTCATAGAAGAACAAGAGCATACAAGTTACAAGCAGTCGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAAACTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAAGTTGAAATCTACATATTGCAGAAGTTTGTTGAGGATTTGGAAGAGAAAAATCTTTCTTTGATTATTGAATGCGAACAATATGAGGAGGCATCCAAGTTATCAGATAAACTTATTACTGAACTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATTGATAAATTAAGAGCAGGAATCTGTAAGGTATTAATGGCACTTCAAATGGATCAAGATTGTGGGCAGGGAAATGTGAAAGAAGAGAGAATTATGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAGCTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGTTAGTTCAGAACTCAGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGATGAAAAACCAGTTGATGATGCAAGTTAGCCAGTGGGAACAGCATGAGCTACTGCTGAAGGCTGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTTATGCTGGAAAAGGAAAATTTTAATGTTGCTGAAGAAAAAAAAACGTTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCACAATTTAATCATCCAGGAAGTGATTGCTTTCAACATTCTATCATCAATTTTTGAAAGCTTCAAAACCGAGAAATTCTTGGAAATAGAAAAGCTTGTTAAAGATATATGTCATCTCCAAGTGGTTAATTCTGATTCAAGGGAAGAATTCGGAAAGTTGGCAGAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCTGTAGAGAAATTGTCCAAGGAGGTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTGGGAAATGATTTTCTGAGGCTAAAGGCCCAAGAGCTATCTGAAGCAGAAGCAGAGCTTAAAAATTCTCAAAATGTCAACATGAAGTTGTCTGGGACAGTTGAGGAGCTCAAGATGGAAGGTAAGGAATCGATGAAGATCAGACACGGCCTACAGAATGAGAATTTTCAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAAAGCCTCTGTGAAGTAAATAAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTTGGGAAATGCAAAATTCGAGAGGAGTGTCTAAGTTTAGAACTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAAGCTGAAGCCACAACATTTTATTTTGATCTTCAAATCTCATCAATACGGGAGGTTTTGTACGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAATGCTGGGGATGAGAACGCTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTCAGTTTCCTAGAAACTGAAATCAGAGAAATGGAGTCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTTTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTGATCACAGGATCTGTAATGGCCACAAATATGAGATATTGGATTTACAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAAAAACTCAGCAAAGAAGCTACTGACAAACATATCAAAGACTTCAAATCAGAAGGAGCCCCCCGTCAGAAAGTGACGATGAAGGAAAAGAAAGATTTGGTAGATGGAATTACTAGTAATCTGAAGACAAGAAAGAAGAAACCCGACAATGGAATATTAATGAAAGATATTCCATTGGATCATGTATCAGATAGTTCTTTTCAGAGAAGAAGCAAAAGGGAAAGTAGTGAGACCAATGATCAAATGCTTAAGTTGTGGGAAACTGATGAGCAGGATTGTGACCAGAATTTGGTTGATAGCTCGCCACCACAAAGCCCACCTGATCCACAAATCGAGTACCCACATTTGGAAATTGTAGAGCATAAGAGTCCAGACTTTTCCTCAGAACTGCAAGCAGAGAAGGAGTTGAGCGTTGATAGATTAGAACTATCTCCCAGTATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAGATTTTAGAGAGGCTTGATTCAGATGTCGTTCAATTGACAGGTCTTCTAACAAGCGTTCAAGATCTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCCAGAAACAACGAATATGACACGGTCGAAAAACATATAAAAGAAGTCGAGGAAGCCATTTATCAGCAAGTAAATATGAATGGTCAACTGAAGCAGAATTTAGAACGCAGTCCTTCATCCTTTGAGCGAAGACCATCAGTCGAGCTCGAAGCAACTGGAAACATCCCCCTAAGTAAACTAACAGAGCAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAGTTTGAGGTACAGAACATTCAGCGTGTTGTGCTGAAACTTGAAGCCGAGAAGAAAAGAAAAGGGAAGAACAAATTCTCCAAGAGTAAACCTGGTGTTATTCTGAGAGACTTCATCTGCAGAAGCGGAAAACGAAGTGAAAGACGAAAGAAGTCGTGCTCTTGTGGATGCACAAGACCTACTACTCATGGAGACTGA 5475 39.62 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRHAHKAMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHAKDDLHKESGSSSSTNQHPLRMKGDGAGESNSCVSKGGLKQLNEMFASRKNGPETLEVSEGSIGTQSVFHEGESDPSQLSRQINDHDSQVLCESVSESDEKLDAEIQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNSGLLQYNQCLQKISSLEKLLAVTQQDAEGQNERAAKAEIEAQNLEQQLSRLESEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQMNSSEAEVKALKRSLDELNEEKEIASRNYEQCLEKIAKMETEISYAQDDAKRLKGELVMTNAKLETTEERCAHLEKSNHSLQFEADKLVQKIAIKDRELAEKQDELKKLHNLMNEEQSRFVQVEKTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKMLNELHFSSNTSMKNLEDQLSGLKEIKEKLEEVVSQKEEQSNLLEKEIYHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACEKDRNKIEALYEKLSYMDALAKENSNLKVSLAELNAELEKIREKVKESQEVSQFTQGEKTALVAEKSSLLSQLQNVTENMMKLLEKNTLLEASLSSANKELEGLRAKTKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLEKRFTNLEEKYADLENDKDSALHQVEELRFSLLIEEQEHTSYKQSTEARLAGLENNVHKLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLIIECEQYEEASKLSDKLITELEGENLEQQVEVEFMYNEIDKLRAGICKVLMALQMDQDCGQGNVKEERIMIVDILARIEDLKASVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKMKNQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENFNVAEEKKTLLKKFLDLEEDKNIIQQEQHNLIIQEVIAFNILSSIFESFKTEKFLEIEKLVKDICHLQVVNSDSREEFGKLAEKFQLKEVENLHLNGSVEKLSKEVHEAEDLNDELNYQILLGNDFLRLKAQELSEAEAELKNSQNVNMKLSGTVEELKMEGKESMKIRHGLQNENFQLSEKCLSQENDIQSLCEVNKNLKSEVDLLNEEVGKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTMEIEQLRERVSFLETEIREMESQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVDHRICNGHKYEILDLQKIGAMIKAVEKAVIKEKEKLSKEATDKHIKDFKSEGAPRQKVTMKEKKDLVDGITSNLKTRKKKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETDEQDCDQNLVDSSPPQSPPDPQIEYPHLEIVEHKSPDFSSELQAEKELSVDRLELSPSIRERIRRGRKGKILERLDSDVVQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIYQQVNMNGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNKFSKSKPGVILRDFICRSGKRSERRKKSCSCGCTRPTTHGD* 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9929551 9937873 - CsaV3_3G013000.1 Csa03g01300 522205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01300 1824 Coils Coil 1239 1276 - -
Csa03g01300 1824 Coils Coil 1382 1416 - -
Csa03g01300 1824 SUPERFAMILY Tropomyosin 229 434 - -
Csa03g01300 1824 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Csa03g01300 1824 Coils Coil 1094 1114 - -
Csa03g01300 1824 Coils Coil 915 935 - -
Csa03g01300 1824 Coils Coil 229 312 - -
Csa03g01300 1824 Coils Coil 1214 1234 - -
Csa03g01300 1824 MobiDBLite consensus disorder prediction 142 173 - -
Csa03g01300 1824 Coils Coil 593 634 - -
Csa03g01300 1824 PANTHER PROTEIN NETWORKED 4A 1 1824 - -
Csa03g01300 1824 MobiDBLite consensus disorder prediction 1531 1548 - -
Csa03g01300 1824 Coils Coil 558 585 - -
Csa03g01300 1824 Coils Coil 743 784 - -
Csa03g01300 1824 Coils Coil 397 522 - -
Csa03g01300 1824 Coils Coil 806 854 - -
Csa03g01300 1824 MobiDBLite consensus disorder prediction 1531 1551 - -
Csa03g01300 1824 Coils Coil 327 375 - -
Csa03g01300 1824 Coils Coil 694 728 - -
Csa03g01300 1824 Coils Coil 663 690 - -
Csa03g01300 1824 Coils Coil 1031 1065 - -
Csa03g01300 1824 Coils Coil 866 900 - -
Csa03g01300 1824 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Csa03g01300 1824 Coils Coil 1305 1332 - -
Csa03g01300 1824 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1824 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01300 - - - csv:101218746 3367.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01145 Csa-Chr2:11187049 Csa03g01300 Csa-Chr3:9929551 1.12E-50 dispersed
Csa03g01300 Csa-Chr3:9929551 Csa03g04495 Csa-Chr3:39146135 1.16E-19 dispersed
Csa05g03111 Csa-Chr5:31100920 Csa03g01300 Csa-Chr3:9929551 3.73E-06 dispersed
Csa01g00481 Csa-Chr1:3128511 Csa03g01300 Csa-Chr3:9929551 1.94E-39 transposed
Csa01g00512 Csa-Chr1:3405378 Csa03g01300 Csa-Chr3:9929551 3.86E-11 transposed
Csa03g00688 Csa-Chr3:6122513 Csa03g01300 Csa-Chr3:9929551 3.76E-37 transposed
Csa03g01300 Csa-Chr3:9929551 Csa07g01693 Csa-Chr7:17427361 1.58E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01300 Csa_Chr03 FPKM 23.324484 28.478796 24.439198 24.517426 19.712975 19.327875 18.668814 24.750635 23.142557 19.189034