Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01303 | ATGGATTCGAAAGGAAATGTTATGGGGGGTGCTGCGATCCCAAAGGAGACACAGAACCAGGATAGAACTCCGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGACATGATTGATTTGAAAACTCTAGATATACAGCTAGAAAAGCACTTGAGCCGTGTTTGGTCAAAAAGCATTGATAATCAAATGCCTAAGGAGCCGTGGGAGATTGATTTGTCTAAACTTGATATGATAAAACAAATTGCTCAAGGGACTTACGGAACAGTATACAGGGGTAAATATGACAACCAAGAGGTTGCAGTTAAGATATTGGACTGGGGAGAGGAGGGTCTAGCCACGATGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTATCGGAGCTTCAATGGGAGCTACAAATCTTAAAATTCCAATGGATGGTCAAAATTCGTTTCCATCTAGGGCCTGTTGTGTTGTTGTTGAGTACGTTCCTAGCGGGACATTAAAAGATCATTTGATTAGATACTGGACAAAGAAACTTGCCATTAAGGCTGTAGTTAAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATTTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGGATATTAACGATAATGTCAAAATTGCTGATTTTGGGGTTGCCCGCGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGCAACTGGTACCCTAGGATACATGGCCCCGGAGGTTCTTCAAGGGAAGCCGTACAATAGAAGTTGTGATGTCTATAGCTTTGGGATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATATGCCGATCTTAGTTTCGCTGATGTGTCATCTGCAGTTGTGAGACATAATCTGCGGCCTAGTATCCCGCGATGCTGTCCAAGCTCTCTAGCAAATGTGATGAAGAAATGCTGGGATGCTAACCCAGAGAAACGCCCGGAAATGCACGAGGTTGTCAGAATGTTGGAGGCCATTGATACAAGCAAAGGAGGAGGGATGATTAATCCCGATGACATTAAATGCTTCTGTCTAGGGCCTTTCGGCAAGCTCCGAGGGCAACAAACGTCTCCATTAATGGCGGCAAATCTTTTTCCAACCATCTCCATCCCGCCGAATTTCATCAAACCCACCACTCAGAATGACTCAAAGCATACCCCTCCCCACCATTTTCAAATTGGGTTGTTCAAAAGTTGCAAAACCATAGATGAGCTTGGACAGTTACACTGTTACGCGTTGAAGCAGGGTCTCATTCGTAAACAATCGACTGTAACTAAGCTTATATCCACTTGTGTGGAAATGGGCACTTCAGAAAGCTTGGATTTTGCTCGAAAAGCGTTCGAGCTTTTCCATGAAGACGGGGAAGCAAATGTCACTCTTTTTATGTACAATTTGTTAATCAGAGGATACTCTGCTGCAGGGCTTTATGATGAAGCTATTTCTCTGTATGTTCAGATGATCGAGTTTGGGTTTATGCCAGATAACTTCACGTTTCCATTTGTGTTAAGTGCGTGTGCTAAGACTGCTGCGTTTGTTGAAGGGATTCAGCTCCATGGAGCTCTTCTGAAGATTGGTTTAGAGGGAGATATGTTTGTTGCTAATTCTCTGATACATCTATATGCGGAAGGTGGAGAGTTTTTGTTTGCTCGAAAGGTGTTTGATGGAATGCTTGAGAGAAATGTTGTTTCATGGACCAGCTTGATTTGTGGTTATTCTAGGACAGATTTTTTTGGAGAGGCTGTGGCTTTGTTTTTCCAAATGATCGAGGCAGGTGTTAAACCCAATTCTGTCACAATGGTGTGTGTGATATCAGCTTGTGCCAAGTTGAAAGATCTTGAACTAGCCAAGAGACTCCATGCTTACATTGAAGAGTCAGAAATGGAGCTTAATACTCATATGGTGAATGCACTTGCGGATATGTTCATGAAATGTGGAGAAACTGGTGCTGCAAAGCGATTGTATGATGAATGTGTTGATAAGAATTTGGTTTTATGTAACACAATCATGTCAAATTATGCACGCCATGGTATGCCGAACGAGGTACTCGCTGTCTTGGTAGATATGCTTCAATTAGATCTTCGGCCAGATAGAGTTTCGTTGTTACCAGCAATCTCGGCATGTGGGCAGATGGGTGACTATCTACTTGGGAAATGCTGCCACAACTATTCTCTGAGAAATGGGTATGAAGGTTGGGATAACATTTGCAATGCAATGATTGATATGTATATGAAGTGTGGAAAACAAGAAATGGCGTACAGAGTTTTTGACGGTATGTTAAATAAGACCATTGTGTCGTGGAACTCATTACTTGTTGGTTACATTAGAAACAAAGATTTAGAGTCAGCTAGGAAGATATTCAATGAGATGCCGGAAAAGGATATTGTATCTTGGAACACGATGCTTAATGCTTTGGTTCAAGAAAGTATGTTTGATGAAGCAATTGAATTGTTCCGAGAGATGCAATTAAAGGAAATAAAAGTAGACAGGGTGACAATGGTAGAAGTTGCATCGGCATGTGGAAATCTTGGAGCTCTCGAACTCGCTAAGTGGGTATATTCCCATATTGTAAAGAACGCTATCTATTGTGATATGTTGCTTGAGACAGCATTGGTTGATATGTTTGCTAGGTGTGGTGACCCTCATAGTGCAATGAATGTGTTCAACAATATGCATAGAAAAGACGTCTCAGCATGGACAGCAGCCATTGGAGCAATGGCTGTGAATGGGAATGTAAATGCAGTCAACTAG | 2847 | 42.04 | MDSKGNVMGGAAIPKETQNQDRTPNSKVAGMGSISSKDMIFRADMIDLKTLDIQLEKHLSRVWSKSIDNQMPKEPWEIDLSKLDMIKQIAQGTYGTVYRGKYDNQEVAVKILDWGEEGLATMAETAALRASFRQEVAVWHKLDHPNVTKFIGASMGATNLKIPMDGQNSFPSRACCVVVEYVPSGTLKDHLIRYWTKKLAIKAVVKLALDLSRGLSYLHSKKIVHRDVKTENMLMDINDNVKIADFGVARVEAQNPRDMTGATGTLGYMAPEVLQGKPYNRSCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRHNLRPSIPRCCPSSLANVMKKCWDANPEKRPEMHEVVRMLEAIDTSKGGGMINPDDIKCFCLGPFGKLRGQQTSPLMAANLFPTISIPPNFIKPTTQNDSKHTPPHHFQIGLFKSCKTIDELGQLHCYALKQGLIRKQSTVTKLISTCVEMGTSESLDFARKAFELFHEDGEANVTLFMYNLLIRGYSAAGLYDEAISLYVQMIEFGFMPDNFTFPFVLSACAKTAAFVEGIQLHGALLKIGLEGDMFVANSLIHLYAEGGEFLFARKVFDGMLERNVVSWTSLICGYSRTDFFGEAVALFFQMIEAGVKPNSVTMVCVISACAKLKDLELAKRLHAYIEESEMELNTHMVNALADMFMKCGETGAAKRLYDECVDKNLVLCNTIMSNYARHGMPNEVLAVLVDMLQLDLRPDRVSLLPAISACGQMGDYLLGKCCHNYSLRNGYEGWDNICNAMIDMYMKCGKQEMAYRVFDGMLNKTIVSWNSLLVGYIRNKDLESARKIFNEMPEKDIVSWNTMLNALVQESMFDEAIELFREMQLKEIKVDRVTMVEVASACGNLGALELAKWVYSHIVKNAIYCDMLLETALVDMFARCGDPHSAMNVFNNMHRKDVSAWTAAIGAMAVNGNVNAVN* | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9965135 | 9971335 | + | CsaV3_3G013030.1 | Csa03g01303 | 522208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 896 | 930 | IPR002885 | - | |
Csa03g01303 | 948 | Pfam | PPR repeat | 768 | 794 | IPR002885 | - | |
Csa03g01303 | 948 | Pfam | PPR repeat | 696 | 724 | IPR002885 | - | |
Csa03g01303 | 948 | Pfam | PPR repeat | 901 | 927 | IPR002885 | - | |
Csa03g01303 | 948 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 452 | 625 | - | - | |
Csa03g01303 | 948 | Gene3D | Transferase(Phosphotransferase) domain 1 | 182 | 368 | - | - | |
Csa03g01303 | 948 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 623 | 724 | - | - | |
Csa03g01303 | 948 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 719 | 945 | - | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 797 | 828 | IPR002885 | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 696 | 729 | IPR002885 | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 495 | 527 | IPR002885 | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 595 | 628 | IPR002885 | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 567 | 595 | IPR002885 | - | |
Csa03g01303 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 828 | 861 | IPR002885 | - | |
Csa03g01303 | 948 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 452 | 625 | - | - | |
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 492 | 526 | IPR002885 | - | |
Csa03g01303 | 948 | Gene3D | Tetratricopeptide repeat domain | 751 | 864 | IPR011990 | GO:0005515 | |
Csa03g01303 | 948 | Gene3D | Tetratricopeptide repeat domain | 423 | 543 | IPR011990 | GO:0005515 | |
Csa03g01303 | 948 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 623 | 724 | - | - | |
Csa03g01303 | 948 | ProSiteProfiles | Protein kinase domain profile. | 83 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01303 | 948 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 719 | 945 | - | - | |
Csa03g01303 | 948 | CDD | STKc_MAP3K-like | 89 | 356 | - | - | |
Csa03g01303 | 948 | Pfam | Protein tyrosine and serine/threonine kinase | 84 | 356 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | Gene3D | Tetratricopeptide repeat domain | 546 | 642 | IPR011990 | GO:0005515 | |
Csa03g01303 | 948 | Gene3D | Tetratricopeptide repeat domain | 865 | 947 | IPR011990 | GO:0005515 | |
Csa03g01303 | 948 | Gene3D | Tetratricopeptide repeat domain | 643 | 750 | IPR011990 | GO:0005515 | |
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 826 | 860 | IPR002885 | - | |
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 694 | 728 | IPR002885 | - | |
Csa03g01303 | 948 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 356 | IPR011009 | - | |
Csa03g01303 | 948 | SMART | serkin_6 | 83 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 795 | 825 | IPR002885 | - | |
Csa03g01303 | 948 | Gene3D | Phosphorylase Kinase; domain 1 | 71 | 165 | - | - | |
Csa03g01303 | 948 | SUPERFAMILY | HCP-like | 471 | 852 | - | - | |
Csa03g01303 | 948 | PRINTS | Tyrosine kinase catalytic domain signature | 283 | 305 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | PRINTS | Tyrosine kinase catalytic domain signature | 327 | 349 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | PRINTS | Tyrosine kinase catalytic domain signature | 217 | 235 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | PRINTS | Tyrosine kinase catalytic domain signature | 179 | 192 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | Pfam | PPR repeat family | 494 | 540 | IPR002885 | - | |
Csa03g01303 | 948 | Pfam | PPR repeat family | 825 | 865 | IPR002885 | - | |
Csa03g01303 | 948 | Pfam | PPR repeat family | 592 | 641 | IPR002885 | - | |
Csa03g01303 | 948 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 223 | 235 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g01303 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 593 | 627 | IPR002885 | - | |
Csa03g01303 | 948 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01303 | Csa-Chr3:9965135 | Csa03g03932 | Csa-Chr3:34431060 | 9.18E-168 | dispersed | |
Csa02g00129 | Csa-Chr2:897841 | Csa03g01303 | Csa-Chr3:9965135 | 3.57E-07 | transposed | |
Csa03g04153 | Csa-Chr3:36483192 | Csa03g01303 | Csa-Chr3:9965135 | 1.00E-29 | transposed | |
Csa05g02406 | Csa-Chr5:26153870 | Csa03g01303 | Csa-Chr3:9965135 | 9.16E-07 | transposed | |
Csa07g01747 | Csa-Chr7:17871892 | Csa03g01303 | Csa-Chr3:9965135 | 7.80E-08 | transposed | |
Csa03g01303 | Csa-Chr3:9965135 | Csa07g01691 | Csa-Chr7:17390292 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77983 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-60 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01303 | - | - | csv:105434834 | 1096.26 |