Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01303 ATGGATTCGAAAGGAAATGTTATGGGGGGTGCTGCGATCCCAAAGGAGACACAGAACCAGGATAGAACTCCGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGACATGATTGATTTGAAAACTCTAGATATACAGCTAGAAAAGCACTTGAGCCGTGTTTGGTCAAAAAGCATTGATAATCAAATGCCTAAGGAGCCGTGGGAGATTGATTTGTCTAAACTTGATATGATAAAACAAATTGCTCAAGGGACTTACGGAACAGTATACAGGGGTAAATATGACAACCAAGAGGTTGCAGTTAAGATATTGGACTGGGGAGAGGAGGGTCTAGCCACGATGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTATCGGAGCTTCAATGGGAGCTACAAATCTTAAAATTCCAATGGATGGTCAAAATTCGTTTCCATCTAGGGCCTGTTGTGTTGTTGTTGAGTACGTTCCTAGCGGGACATTAAAAGATCATTTGATTAGATACTGGACAAAGAAACTTGCCATTAAGGCTGTAGTTAAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATTTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGGATATTAACGATAATGTCAAAATTGCTGATTTTGGGGTTGCCCGCGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGCAACTGGTACCCTAGGATACATGGCCCCGGAGGTTCTTCAAGGGAAGCCGTACAATAGAAGTTGTGATGTCTATAGCTTTGGGATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATATGCCGATCTTAGTTTCGCTGATGTGTCATCTGCAGTTGTGAGACATAATCTGCGGCCTAGTATCCCGCGATGCTGTCCAAGCTCTCTAGCAAATGTGATGAAGAAATGCTGGGATGCTAACCCAGAGAAACGCCCGGAAATGCACGAGGTTGTCAGAATGTTGGAGGCCATTGATACAAGCAAAGGAGGAGGGATGATTAATCCCGATGACATTAAATGCTTCTGTCTAGGGCCTTTCGGCAAGCTCCGAGGGCAACAAACGTCTCCATTAATGGCGGCAAATCTTTTTCCAACCATCTCCATCCCGCCGAATTTCATCAAACCCACCACTCAGAATGACTCAAAGCATACCCCTCCCCACCATTTTCAAATTGGGTTGTTCAAAAGTTGCAAAACCATAGATGAGCTTGGACAGTTACACTGTTACGCGTTGAAGCAGGGTCTCATTCGTAAACAATCGACTGTAACTAAGCTTATATCCACTTGTGTGGAAATGGGCACTTCAGAAAGCTTGGATTTTGCTCGAAAAGCGTTCGAGCTTTTCCATGAAGACGGGGAAGCAAATGTCACTCTTTTTATGTACAATTTGTTAATCAGAGGATACTCTGCTGCAGGGCTTTATGATGAAGCTATTTCTCTGTATGTTCAGATGATCGAGTTTGGGTTTATGCCAGATAACTTCACGTTTCCATTTGTGTTAAGTGCGTGTGCTAAGACTGCTGCGTTTGTTGAAGGGATTCAGCTCCATGGAGCTCTTCTGAAGATTGGTTTAGAGGGAGATATGTTTGTTGCTAATTCTCTGATACATCTATATGCGGAAGGTGGAGAGTTTTTGTTTGCTCGAAAGGTGTTTGATGGAATGCTTGAGAGAAATGTTGTTTCATGGACCAGCTTGATTTGTGGTTATTCTAGGACAGATTTTTTTGGAGAGGCTGTGGCTTTGTTTTTCCAAATGATCGAGGCAGGTGTTAAACCCAATTCTGTCACAATGGTGTGTGTGATATCAGCTTGTGCCAAGTTGAAAGATCTTGAACTAGCCAAGAGACTCCATGCTTACATTGAAGAGTCAGAAATGGAGCTTAATACTCATATGGTGAATGCACTTGCGGATATGTTCATGAAATGTGGAGAAACTGGTGCTGCAAAGCGATTGTATGATGAATGTGTTGATAAGAATTTGGTTTTATGTAACACAATCATGTCAAATTATGCACGCCATGGTATGCCGAACGAGGTACTCGCTGTCTTGGTAGATATGCTTCAATTAGATCTTCGGCCAGATAGAGTTTCGTTGTTACCAGCAATCTCGGCATGTGGGCAGATGGGTGACTATCTACTTGGGAAATGCTGCCACAACTATTCTCTGAGAAATGGGTATGAAGGTTGGGATAACATTTGCAATGCAATGATTGATATGTATATGAAGTGTGGAAAACAAGAAATGGCGTACAGAGTTTTTGACGGTATGTTAAATAAGACCATTGTGTCGTGGAACTCATTACTTGTTGGTTACATTAGAAACAAAGATTTAGAGTCAGCTAGGAAGATATTCAATGAGATGCCGGAAAAGGATATTGTATCTTGGAACACGATGCTTAATGCTTTGGTTCAAGAAAGTATGTTTGATGAAGCAATTGAATTGTTCCGAGAGATGCAATTAAAGGAAATAAAAGTAGACAGGGTGACAATGGTAGAAGTTGCATCGGCATGTGGAAATCTTGGAGCTCTCGAACTCGCTAAGTGGGTATATTCCCATATTGTAAAGAACGCTATCTATTGTGATATGTTGCTTGAGACAGCATTGGTTGATATGTTTGCTAGGTGTGGTGACCCTCATAGTGCAATGAATGTGTTCAACAATATGCATAGAAAAGACGTCTCAGCATGGACAGCAGCCATTGGAGCAATGGCTGTGAATGGGAATGTAAATGCAGTCAACTAG 2847 42.04 MDSKGNVMGGAAIPKETQNQDRTPNSKVAGMGSISSKDMIFRADMIDLKTLDIQLEKHLSRVWSKSIDNQMPKEPWEIDLSKLDMIKQIAQGTYGTVYRGKYDNQEVAVKILDWGEEGLATMAETAALRASFRQEVAVWHKLDHPNVTKFIGASMGATNLKIPMDGQNSFPSRACCVVVEYVPSGTLKDHLIRYWTKKLAIKAVVKLALDLSRGLSYLHSKKIVHRDVKTENMLMDINDNVKIADFGVARVEAQNPRDMTGATGTLGYMAPEVLQGKPYNRSCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRHNLRPSIPRCCPSSLANVMKKCWDANPEKRPEMHEVVRMLEAIDTSKGGGMINPDDIKCFCLGPFGKLRGQQTSPLMAANLFPTISIPPNFIKPTTQNDSKHTPPHHFQIGLFKSCKTIDELGQLHCYALKQGLIRKQSTVTKLISTCVEMGTSESLDFARKAFELFHEDGEANVTLFMYNLLIRGYSAAGLYDEAISLYVQMIEFGFMPDNFTFPFVLSACAKTAAFVEGIQLHGALLKIGLEGDMFVANSLIHLYAEGGEFLFARKVFDGMLERNVVSWTSLICGYSRTDFFGEAVALFFQMIEAGVKPNSVTMVCVISACAKLKDLELAKRLHAYIEESEMELNTHMVNALADMFMKCGETGAAKRLYDECVDKNLVLCNTIMSNYARHGMPNEVLAVLVDMLQLDLRPDRVSLLPAISACGQMGDYLLGKCCHNYSLRNGYEGWDNICNAMIDMYMKCGKQEMAYRVFDGMLNKTIVSWNSLLVGYIRNKDLESARKIFNEMPEKDIVSWNTMLNALVQESMFDEAIELFREMQLKEIKVDRVTMVEVASACGNLGALELAKWVYSHIVKNAIYCDMLLETALVDMFARCGDPHSAMNVFNNMHRKDVSAWTAAIGAMAVNGNVNAVN* 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9965135 9971335 + CsaV3_3G013030.1 Csa03g01303 522208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 896 930 IPR002885 -
Csa03g01303 948 Pfam PPR repeat 768 794 IPR002885 -
Csa03g01303 948 Pfam PPR repeat 696 724 IPR002885 -
Csa03g01303 948 Pfam PPR repeat 901 927 IPR002885 -
Csa03g01303 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 452 625 - -
Csa03g01303 948 Gene3D Transferase(Phosphotransferase) domain 1 182 368 - -
Csa03g01303 948 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 623 724 - -
Csa03g01303 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 719 945 - -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 797 828 IPR002885 -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 696 729 IPR002885 -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 495 527 IPR002885 -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 595 628 IPR002885 -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 567 595 IPR002885 -
Csa03g01303 948 TIGRFAM PPR: pentatricopeptide repeat domain 828 861 IPR002885 -
Csa03g01303 948 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 452 625 - -
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Csa03g01303 948 Gene3D Tetratricopeptide repeat domain 751 864 IPR011990 GO:0005515
Csa03g01303 948 Gene3D Tetratricopeptide repeat domain 423 543 IPR011990 GO:0005515
Csa03g01303 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 623 724 - -
Csa03g01303 948 ProSiteProfiles Protein kinase domain profile. 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01303 948 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 719 945 - -
Csa03g01303 948 CDD STKc_MAP3K-like 89 356 - -
Csa03g01303 948 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Csa03g01303 948 Gene3D Tetratricopeptide repeat domain 546 642 IPR011990 GO:0005515
Csa03g01303 948 Gene3D Tetratricopeptide repeat domain 865 947 IPR011990 GO:0005515
Csa03g01303 948 Gene3D Tetratricopeptide repeat domain 643 750 IPR011990 GO:0005515
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 826 860 IPR002885 -
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Csa03g01303 948 SUPERFAMILY Protein kinase-like (PK-like) 63 356 IPR011009 -
Csa03g01303 948 SMART serkin_6 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 795 825 IPR002885 -
Csa03g01303 948 Gene3D Phosphorylase Kinase; domain 1 71 165 - -
Csa03g01303 948 SUPERFAMILY HCP-like 471 852 - -
Csa03g01303 948 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Csa03g01303 948 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Csa03g01303 948 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Csa03g01303 948 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Csa03g01303 948 Pfam PPR repeat family 494 540 IPR002885 -
Csa03g01303 948 Pfam PPR repeat family 825 865 IPR002885 -
Csa03g01303 948 Pfam PPR repeat family 592 641 IPR002885 -
Csa03g01303 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Csa03g01303 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Csa03g01303 948 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01303 Csa-Chr3:9965135 Csa03g03932 Csa-Chr3:34431060 9.18E-168 dispersed
Csa02g00129 Csa-Chr2:897841 Csa03g01303 Csa-Chr3:9965135 3.57E-07 transposed
Csa03g04153 Csa-Chr3:36483192 Csa03g01303 Csa-Chr3:9965135 1.00E-29 transposed
Csa05g02406 Csa-Chr5:26153870 Csa03g01303 Csa-Chr3:9965135 9.16E-07 transposed
Csa07g01747 Csa-Chr7:17871892 Csa03g01303 Csa-Chr3:9965135 7.80E-08 transposed
Csa03g01303 Csa-Chr3:9965135 Csa07g01691 Csa-Chr7:17390292 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77983 PF07714 PK_Tyr_Ser-Thr 2.00E-60 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01303 - - csv:105434834 1096.26