Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01305 ATGCAATACTGCCGCTTGCTTTTCTCTCCGGGGGGTTTCTCTGCTCTTCCCGGTTTTGTGGGAGCACTAAACCGAGATTTCCAGTTGAGGTTCAAACCTTCTTGTTGTAGGTTGTACAGCATCTCCCGCAGTAATTTCGACTTCACAGACTTGACATGTCCCCATTCATGGTATCCAAATGCACGAAAGAAACATCGCAAAATTTTTCTGCACATGGGTCCAACAAATAGTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTGTATATTGTGGTCCCCTGAGATTATTGGCCTGGGAAGTCGCAAAGCGATTGAATAATGCTAAAATTCCCTGTGATCTGATCACAGGACAAGAGAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTGACGGTTGAGATGGCCGATGTAACTTCCAGCTATAGTTGTGCTGTTATCGACGAAATTCAGATGTTGGGCTGTAAGACGAGAGGTTATTCTTTTACACGTGCCCTACTTGGACTCTGTGCTGATGAGATTCATCTTTGTGGGGATGCAGCTGTTGTACCCCTTATTCAGGAAATTCTTAAAGTAACTGGTGATGACATTGAGGTGCAATACTATGAGAGACTTTCACCTCTGATTCCATTGAACATTCCACTTGGATCCTATTCTAATATTAGGAAGGGTGATTGCATTGTCACCTTTTCACGTCGTAGAATATATGGTTATAAGAAAGAAATAGAAAGACAAGGTGGACATCTTTGCTCTATAGTTTATGGCTCACTACCACCAGAAACTCGAACAAGGCAGGCAATGATGTTCAATGATACAACGAGCGAGTTTGATGTGCTGGTGGCTAGCGATGCCATTGGGATGGGTCTTAATTTGAACATCTCGAGGATCATATTTTCAACTATGGAGAAATTTGATGGTTTTGAGATGCGGGAGCTTACTGTACCAGAGATCAAACAGATTGCAGGTAGAGCTGGCAGGTATGGATCCAAATTTCCCATTGGTGAAGTAACTTGTATAAGTGGAGATGATTTACCCTTACTTCATTCATCACTTAAGTCCGCTTCTCCCACTATAGAGAGAGCTGGGCTATTTCCAACTTTTGAACTCATGTATTTATATTCCCGTTTGCATCCTGAACATGGCCTGCGGCAGATACTGGAGCACTTTGTTGAGAATGCTAAATTGTCCGAAAATTATTTCATCGTTGACTGTGAAGTAATGTTGAAAGTTGCTGCTGTCCTTGATGAGATGCCTCTCAGTTTGCATGATAAGTACCTTTTCTGTATCAGCCCTGCGGACATGGATGACGAAATTACCTCCCAAGGTCTTACACAGTTTGTTCAAGGTTATGCAAATAAAGGCATTGTTCGACTACGAGAAATATTCAAAGAAGGAACACTTAAAGTGCCAGAAACACCAGCTGCACTGAAGGAACTGGAATCCATTCACAAGGTGTTGGATCTCTATGTTTGGTTGAGTTTCCGACTGGAGGAATCATTCCCCGACCGTGAACGAGCAGATTCACAGAAGTCATTCTGCAGCATGCTAATTGAGGAGTTTTTGGGAAGATCTGGAATGCAAATACCAACAAGAAGGAAATTGAAGTCGAACATCCGCTCAAGGTCTCTAAACTCCCTCTTATCCGTTGTTGCTAAACGACGTCTCTAA 1683 42.72 MQYCRLLFSPGGFSALPGFVGALNRDFQLRFKPSCCRLYSISRSNFDFTDLTCPHSWYPNARKKHRKIFLHMGPTNSGKTHNALKRLESSDSGVYCGPLRLLAWEVAKRLNNAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSSYSCAVIDEIQMLGCKTRGYSFTRALLGLCADEIHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPLIPLNIPLGSYSNIRKGDCIVTFSRRRIYGYKKEIERQGGHLCSIVYGSLPPETRTRQAMMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRYGSKFPIGEVTCISGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPEHGLRQILEHFVENAKLSENYFIVDCEVMLKVAAVLDEMPLSLHDKYLFCISPADMDDEITSQGLTQFVQGYANKGIVRLREIFKEGTLKVPETPAALKELESIHKVLDLYVWLSFRLEESFPDRERADSQKSFCSMLIEEFLGRSGMQIPTRRKLKSNIRSRSLNSLLSVVAKRRL* 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9974348 9982088 - CsaV3_3G013050.1 Csa03g01305 522210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01305 560 Pfam Helicase conserved C-terminal domain 230 333 IPR001650 -
Csa03g01305 560 CDD SF2_C_suv3 211 343 - -
Csa03g01305 560 Gene3D - 435 541 - -
Csa03g01305 560 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 481 526 IPR022192 GO:0016817
Csa03g01305 560 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 42 535 - -
Csa03g01305 560 CDD DEXQc_Suv3 66 207 IPR044774 GO:0003724|GO:0005524
Csa03g01305 560 Gene3D - 48 433 - -
Csa03g01305 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 335 IPR027417 -
Csa03g01305 560 Pfam Suv3 C-terminal domain 1 415 456 IPR041082 -
Csa03g01305 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 202 376 IPR001650 -
Csa03g01305 560 SMART helicmild6 245 333 IPR001650 -
Csa03g01305 560 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 42 535 - -
Csa03g01305 560 Gene3D - 209 360 IPR027417 -
Csa03g01305 560 Gene3D - 54 208 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01305 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - csv:101204337 1115.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01305 Csa-Chr3:9974348 Csa06g00063 Csa-Chr6:421114 9.69E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01305 Csa_Chr03 FPKM 0.0 0.0 0.0 0.450424 0.0 0.0 0.0 0.0 0.0 0.0