Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01308 ATGAGAGATGAAAATTCTAAGAAAAGCAAGCTCTCATGGTCCAAGAAAATGGTCAGAAAGTGGTTCAATATTAGGTGTAAAAGCGAGGATTTTCAAGCGGACGATGTTGCTTATAGAGGAGGTGAAATGGATTACAGAAGCAGCAGCTTTTCAGAGAGGGAACCATGCACCATCAAGAAAAGCAAAACAGAGAAATTTAGCAAAAATGGCGAGCAAGGGCGGCGAGGGAAGATGAATCTTGACCATCCTCGTATTATTGATGTGCAGAACTATAGCATTTTTGTTGCTACATGGAACGTGGCTGGAAGATCTCCTCCTAGCAATCTAAATCTGGACGATTGGCTTCAATCCTCACCCCCTGCAGATATTTATGTTCTTGGATTTCAGGAGATAGTGCCATTAAATGCTGGTAATATACTGGGTGCAGAAGACAATGGCCCTGCTAAAAAATGGCAGGCTCTCATTCGAAAAACTCTAAACAATCTTCCAGGAACGAGTGGTGTTAATTCATGTTATACCCCTTCTCCGATTCCGAAACCCATCGTGGAATTAAATGCAGATTTTGAGGGGTCTGCTAGGCAGAAGAATTCATCTTTCTTCCATCGCCGATCATTTCAAACTACTAACAGCTGGCGAATGGATGATCCTTCAATACCACAGCCACGACTCGATCGAAGGTTCAGTGTATGCGACCGTGTTATCTTCGGTCATCGGTCAAGTGATTTTGATCCTAACTTCAGATGGGGTCACAGGCCAAGTGATTACTGCAGACCAAGTGACTACTCAAGGCCAAGTGACTATTCCAGGTCCAGTGACTTTTGCAGGCCAAGTGACTACTCTAGGCCAAGCGACTTTTGCAGGCCGAGTGACTACTCGAGGCCTAGCGACTGCTCACGATGGGGATCATCAGACGATGATAATGTTCCGTGGGAGTCACCAAGCACTGTTTTATTTTCACCAATGTCCCATGGTGGTTCTTCATCACAGGATGGTGGATATAGAATGCCAGGAAATTCAAGATATTGCTTAGTTGCAAGCAAACAAATGGTTGGGATATTTCTCACAATATGGGTAAAAAGTGACTTGAGGGATCATGTGCGAAACATGAAAGTTTCTTGTGTTGGTAGAGGATTGATGGGCTACCTTGGGAATAAGGGATCAATTTCTGTCAGCATGTCTTTGCATCAGACAAGCTTTTGCTTCATTTGTACTCACTTAACATCTGGAGAGAAAGAAGGCGATGAGCTTAGAAGAAACTCAGATGTAATGGAGATTCTTAAGAAGACAAGGTTCCCACGAGTTCACGGTGCAAGCAGCGACGAGAAATCCCCAGAAACAATCCTTGAGCACGATCGCGTTATTTGGCTTGGGGATTTAAACTATCGGATCGCTCTTTCATACCGTTCTGCCAAGGCTCTCGTAGAGATGCAAAACTGGAGGGCATTGCTTGAGAAGGATCAGTTACGAATCGAACAAAGACGTGGGCGTGTATTTTCCGGATGGAATGAAGGAAAGATTTATTTTCCTCCCACATACAAGTATTCGACAAATTCAGACCGATATGCAGGGGAAGGTGCTCACCCAAAAGAGAAACGTCGTAAACCCGCTTGGTGTGATCGGATATTGTGGCATGGAGAAGGCCTCCATCAGTTATCATACGTCCGTGGAGAGTCTAGGTTTTCAGATCATAGACCGGTTTATGGAGTGTTTTGGGCTGAGGTTGAGTCAAGCCGAGGGAGATTGAAGAAAAGCATGAGTTATTCGAGCTCCAGGATTGAGGTCGAGGAGCTTCTCCCTTACGCACATGGATACACTGAACTCAACTTTTTCTGA 1833 44.63 MRDENSKKSKLSWSKKMVRKWFNIRCKSEDFQADDVAYRGGEMDYRSSSFSEREPCTIKKSKTEKFSKNGEQGRRGKMNLDHPRIIDVQNYSIFVATWNVAGRSPPSNLNLDDWLQSSPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWQALIRKTLNNLPGTSGVNSCYTPSPIPKPIVELNADFEGSARQKNSSFFHRRSFQTTNSWRMDDPSIPQPRLDRRFSVCDRVIFGHRSSDFDPNFRWGHRPSDYCRPSDYSRPSDYSRSSDFCRPSDYSRPSDFCRPSDYSRPSDCSRWGSSDDDNVPWESPSTVLFSPMSHGGSSSQDGGYRMPGNSRYCLVASKQMVGIFLTIWVKSDLRDHVRNMKVSCVGRGLMGYLGNKGSISVSMSLHQTSFCFICTHLTSGEKEGDELRRNSDVMEILKKTRFPRVHGASSDEKSPETILEHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLEKDQLRIEQRRGRVFSGWNEGKIYFPPTYKYSTNSDRYAGEGAHPKEKRRKPAWCDRILWHGEGLHQLSYVRGESRFSDHRPVYGVFWAEVESSRGRLKKSMSYSSSRIEVEELLPYAHGYTELNFF* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9998205 10003606 + CsaV3_3G013080.1 Csa03g01308 522213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01308 610 Gene3D Endonuclease/exonuclease/phosphatase 315 597 IPR036691 -
Csa03g01308 610 MobiDBLite consensus disorder prediction 259 308 - -
Csa03g01308 610 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 7 5 609 - -
Csa03g01308 610 SUPERFAMILY DNase I-like 339 574 IPR036691 -
Csa03g01308 610 Gene3D Endonuclease/exonuclease/phosphatase 71 174 IPR036691 -
Csa03g01308 610 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 5 609 IPR045849 GO:0004445|GO:0046855
Csa03g01308 610 SMART i5p_5 283 580 IPR000300 GO:0016791|GO:0046856
Csa03g01308 610 SUPERFAMILY DNase I-like 75 156 IPR036691 -
Csa03g01308 610 MobiDBLite consensus disorder prediction 263 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01308 - - - csv:101204583 1260.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01143 Csa03g01308 CCT
Csa02g01143 Csa03g01308 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01136 Csa-Chr2:11108235 Csa03g01308 Csa-Chr3:9998205 0 dispersed
Csa03g01308 Csa-Chr3:9998205 Csa06g00458 Csa-Chr6:3917968 1.29E-24 dispersed
Csa03g03206 Csa-Chr3:29551643 Csa03g01308 Csa-Chr3:9998205 6.19E-23 transposed
Csa05g02133 Csa-Chr5:24448022 Csa03g01308 Csa-Chr3:9998205 1.06E-23 transposed
Csa02g01143 Csa-Chr2:11160054 Csa03g01308 Csa-Chr3:9998205 0 wgd
Csa03g01308 Csa-Chr3:9998205 Csa07g01687 Csa-Chr7:17360999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g531 Blo01g00119 . . . . Bpe14g01201 . Bma05g01102 . . Cma06g01394 Cma14g01727 Car06g01202 Car14g01558 . Cpe08g00272 Cpe03g01450 Bhi01g00786 Tan10g0815 . Lac12g2261 Hepe05g1571 . . . . . . . . . . . Cone7ag0268 Cone4ag0256 Lsi05g01621 Csa02g01143 Chy05g00400 Cme06g00592 Blo02g00531 Blo07g00227 Bda11g00587 Bda13g00109 Bpe05g00894 Bpe13g00597 Bma02g00832 Bma06g01563 . Cmo06g01398 Cmo14g01766 . . . . . . . . . . . . . Cla05g00524 Cam05g0577 Cec05g0587 Cco05g0585 Clacu05g0573 Cmu05g0543 Cre05g0612 . Csa03g01308 Chy06g00561 Cme05g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000262 3 9 4 3 4 4 7 4 4 4 4 4 7 4 4 7 4 8 7 4 4 4 4 4 4 4 4 12 12 2 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01308 Csa_Chr03 FPKM 4.093117 3.04024 9.82795 8.326196 2.016237 1.524902 1.999127 8.93079 8.592302 9.961149