Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01312 ATGGAATACACAAGGATGGTGGTGGGTCTAGTTGCGGTTATCGTTGCTGTGCACTGGGCAGGAGCAGCTGCACAGTCTGACTGTACAAATGTGCTGATCAGCATGGCGCCTTGCCTGAATTATATTACAGGGAACTCCTCTACCCCATCACAATCATGCTGCACACAGCTTTCAAATGTTGTCCGTTCAAATCCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGGTGAATATCAACCAAACACAGGCCCTAGCTCTGCCCCAAGCTTGCAACGTTCAGACTCCATCTGTCAGCAGCTGCAATGTTGATTCTCCCGCCGGCTCTCCAGCAGGTGCACCAGACTCTTCAAACAATGTTCCTTCAGGAACTGGATCTAAGACTGTTCCATCGACAGACAATGGCTCATCAGACGGAAGCTCCATCCATATGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTATATATGCTTCAGCTTTCAAGTTGTACTGA 510 49.22 MEYTRMVVGLVAVIVAVHWAGAAAQSDCTNVLISMAPCLNYITGNSSTPSQSCCTQLSNVVRSNPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSVSSCNVDSPAGSPAGAPDSSNNVPSGTGSKTVPSTDNGSSDGSSIHMSKPLLFSILLASIYASAFKLY* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10016655 10018220 + CsaV3_3G013120.1 Csa03g01312 522217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01312 169 MobiDBLite consensus disorder prediction 106 144 - -
Csa03g01312 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 108 IPR036312 -
Csa03g01312 169 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Csa03g01312 169 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Csa03g01312 169 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Csa03g01312 169 SMART aai_6 28 105 IPR016140 -
Csa03g01312 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 163 - -
Csa03g01312 169 Pfam Probable lipid transfer 16 105 IPR016140 -
Csa03g01312 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 163 IPR043325 -
Csa03g01312 169 CDD AAI_LTSS 35 97 - -
Csa03g01312 169 Gene3D - 25 107 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01312 - - - csv:101204822 336.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03102 Csa-Chr1:26990410 Csa03g01312 Csa-Chr3:10016655 1.16E-14 dispersed
Csa03g00310 Csa-Chr3:2631525 Csa03g01312 Csa-Chr3:10016655 3.22E-07 dispersed
Csa03g01312 Csa-Chr3:10016655 Csa06g02331 Csa-Chr6:20924084 1.51E-21 dispersed
Csa04g01690 Csa-Chr4:16334416 Csa03g01312 Csa-Chr3:10016655 7.85E-06 dispersed
Csa03g01311 Csa-Chr3:10014404 Csa03g01312 Csa-Chr3:10016655 2.37E-07 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01312 Csa_Chr03 FPKM 15.816712 17.401844 2.023354 1.958592 6.0335 6.205472 5.675533 2.850563 3.114904 2.883385