Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01315 ATGAACTCATCAAGAATCTCCATTCGGCCGTTCAATCTCTCCGACGCCGACGACTTTCTCCGATGGGCCAGCGACGAAAGAGTAACCCGCTATCTCCGATGGAACACAATAACCTCCAAAGAAGAAGCATTAACTTACCTAGAAAAGGTCGCAATTCCCCATCAATGGCGGCGGTCCATATGCCTGGACGGCCGTTCCGTCGGGTACGTTTCTTTCAAGCCAGAATCGGAGGAGAAATGTAGAGCGCATATCAGTTATGCGGTGGCTGCAGAGCACTGGGGACAAGGGATAGCCACGATAGCATTGAGGGCGGCAATTCCGGCGGCGCTGAGACAATTCCCAGAGTTGGTTAGGGTTCAGGCGATGGTTGAGGTGGAAAATGAGGGATCACAGAAGGTTTTGGAAAAATTGGGGTTTTGTAGAGAGGGGGTGTTGAGGAAATACGGATTTTGTAAGGGAGAAATTCGCGATTTGGTTGTTTTCAGCCTTTTGAGAACCGATCAACTCATTTCACCCAATATGTACAGCCACAGGCAATGGAACCTCATGATGACCCCTTCATTGATTTTGTCACAAGTCCATAATCCCAAAAAGAGTAACAAATTGAATTCACGTATAGATGAAAAATACACGCAATGA 639 47.42 MNSSRISIRPFNLSDADDFLRWASDERVTRYLRWNTITSKEEALTYLEKVAIPHQWRRSICLDGRSVGYVSFKPESEEKCRAHISYAVAAEHWGQGIATIALRAAIPAALRQFPELVRVQAMVEVENEGSQKVLEKLGFCREGVLRKYGFCKGEIRDLVVFSLLRTDQLISPNMYSHRQWNLMMTPSLILSQVHNPKKSNKLNSRIDEKYTQ* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10023028 10026019 + CsaV3_3G013150.1 Csa03g01315 522220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01315 212 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 2 165 IPR016181 -
Csa03g01315 212 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 167 - -
Csa03g01315 212 CDD NAT_SF 60 106 - -
Csa03g01315 212 Gene3D - 1 173 - -
Csa03g01315 212 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 6 165 IPR000182 GO:0016407
Csa03g01315 212 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 167 - -
Csa03g01315 212 Pfam Acetyltransferase (GNAT) domain 5 139 IPR000182 GO:0016407
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01315 - - - csv:101219695 332.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02848 Csa-Chr1:24984574 Csa03g01315 Csa-Chr3:10023028 5.73E-72 dispersed
Csa03g01315 Csa-Chr3:10023028 Csa07g02137 Csa-Chr7:20427993 4.11E-08 dispersed
Csa03g01314 Csa-Chr3:10022148 Csa03g01315 Csa-Chr3:10023028 1.05E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g523 . . . . . . . . . . . . . . Sed02g1304 . Cpe03g01443 Bhi01g00794 Tan10g0825 Cmetu02g2090 . Hepe05g1562 . Lcy11g1556 . . . . . . . . . . . . . . Cme06g00599 . . . Bda13g00114 . . . . . . Cmo14g01759 . . . . . . . . . . . . . Cla05g00532 Cam05g0583 Cec05g0593 Cco05g0591 Clacu05g0580 Cmu05g0550 Cre05g0619 . Csa03g01315 Chy06g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003175 1 1 0 1 1 2 0 2 2 2 2 2 1 2 1 0 2 0 0 2 2 5 2 2 2 2 2 2 3 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31182 PF13302 Acetyltransf_3 1.90E-24 CL0257 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01315 Csa_Chr03 FPKM 82.22316 90.166718 1.81487 1.42119 1.761207 1.140383 1.442265 0.0 0.0 0.0