Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01326 ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCTATTTCATCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGCCATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATCTAGAAAATCTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGATTATCACACCACACTACTGGACAGACCAAACCCTAAAGTTCTCTGGATGCCTTGTTGAATTCTTCGAGATGTCGGGGAATCCCGCGAAGACAGAAGTTCTTGAGGATACAAATGGCTGTTCATCCGGGGTGAATAAAAATGAGCTGATTCTTAGACCAGTTTCTCAAGATGAATCTGGGGAGGGCTTGCCATATGCTCCTGAAAATTGGCCCAATCCTGGTGATAACTGGAGTTGGAGGGTGGGGAAGAGAGTTGCTATAACTGGCCATTTTCTGGATAGGTACCTTTATTCTCCTCGTGGTATTAGCGCGTCCGAAAACTCAGCTCGTAAAGGGCAAAGTTTTGCAAGCAAGCTTTCAGTTGAAAGATATATCCAGTCTGAGTTCCCTAATGCAGACGTTGAGGCTTTTTTTGCTTCATTCAGTTGGAAGATACCAGCAAAAAAGTCATCTTCAGCCCAAGGTACTCGGGTAAAACACATTCCATGCTCTCTACCCTCAAAAAAGATAGAGGAATGCTCCGCATCTGCGTCCCAGAATGATAAAGTGGGTTGCAAGGCTGGAAATAAGAACTGTTATAGTTTATCTGTTTCTGAAAATCCATCTTCATCCAAATCCATGTCTTGTGGTATTTGCTGCAGTGAATCTCGCTTTTGCCGTGATTGCTGCTGTATACTTTGCTGCAAGATTATAGACACGACCGTGGAAAGTTATAGCTACATAAAATGTAAAGCAGTGGTGGGTGATGGATATATTTGTGGACATCTTTCTCATATAAAATGTGGTCTTAAATCGTATACAGCTGGGACAGTTGGAGGAAGCATTGGACTGGATGCTGAGTATTATTGTCGACGTTGTGATGCCAGAACGGATTTGGTATCACATGTAGAAAGATTTTTGCAGTCATGCCAATCAGCTGACTGCCAAGATGATGTTGAGGAGATCTTAAACCTTGGTTTATGTATTTTGCGTGGTTCGCACAAAATGAGAGCAAAGGAGTTGTTAAGACACATTGAACTGAGCATTGAGAAGATTAAAACTGGGACTTGCTTGGAAAAGATTTGGAAGATGGAGGAAGATAGCTCAGCAAATTGCACTGATGCACCTGATACTGCTGATTCTACAGAAAGTTCTCATGAAACTTCAGACTCCCTTATAAGCTCAGAATGGACTATGTCCACCCCTTTTGATCATTGGATCGAGTCCTTAAAACTTGAAGACGAAATTGATCAGGTTTTGCATGGACTGAAAAGATCACAGGAGTTCGAGTATAATTTAGCAGAAGAAAAGCTTCTATTACATAAAAATTATCTACATAACCTCTTTCAGCAACTTGAAAAGGAGCAAACTGAACTCAGACATCAAGCACCATCAACGGGACAAAATGCCGTATCAAACAGAGTGGACCAAATAAAACGAGAAGTAAAGAGACTGAAGAGAATGGAAAAGATTGCTGATGGATTTGGAATGACTCCGAAAGATATCCTCAAGGAGGACTTCGATTTGGATGTTGAAATAGAGATACGGAAGTGA 1824 42.05 MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQIITPHYWTDQTLKFSGCLVEFFEMSGNPAKTEVLEDTNGCSSGVNKNELILRPVSQDESGEGLPYAPENWPNPGDNWSWRVGKRVAITGHFLDRYLYSPRGISASENSARKGQSFASKLSVERYIQSEFPNADVEAFFASFSWKIPAKKSSSAQGTRVKHIPCSLPSKKIEECSASASQNDKVGCKAGNKNCYSLSVSENPSSSKSMSCGICCSESRFCRDCCCILCCKIIDTTVESYSYIKCKAVVGDGYICGHLSHIKCGLKSYTAGTVGGSIGLDAEYYCRRCDARTDLVSHVERFLQSCQSADCQDDVEEILNLGLCILRGSHKMRAKELLRHIELSIEKIKTGTCLEKIWKMEEDSSANCTDAPDTADSTESSHETSDSLISSEWTMSTPFDHWIESLKLEDEIDQVLHGLKRSQEFEYNLAEEKLLLHKNYLHNLFQQLEKEQTELRHQAPSTGQNAVSNRVDQIKREVKRLKRMEKIADGFGMTPKDILKEDFDLDVEIEIRK* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10062315 10068764 - CsaV3_3G013260.1 Csa03g01326 522231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01326 607 Coils Coil 558 578 - -
Csa03g01326 607 MobiDBLite consensus disorder prediction 459 484 - -
Csa03g01326 607 Pfam Pre-rRNA-processing protein TSR2 22 99 IPR019398 -
Csa03g01326 607 Pfam PHD - plant homeodomain finger protein 285 418 IPR032881 -
Csa03g01326 607 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 122 602 - -
Csa03g01326 607 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 122 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01326 - - - csv:101220879 960.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01326 Csa-Chr3:10062315 Csa03g04461 Csa-Chr3:38883684 1.14E-19 dispersed
Csa03g01326 Csa-Chr3:10062315 Csa07g00265 Csa-Chr7:2045862 8.45E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g513 . . . . . . . . . . . . Car06g01212 . Sed12g0930 . . Bhi01g00805 Tan10g0838 Cmetu06g0605 . . . Lcy11g1549 . . . . . . . . . . Cone4ag0247 Lsi05g01608 . . Cme06g00606 Blo02g00536 . . Bda13g00118 . . . . . Cmo06g01409 . . . . . . . . . . . . . . Cla05g00540 Cam05g0589 Cec05g0599 . . . . . Csa03g01326 Chy06g00577 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003503 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01326 Csa_Chr03 FPKM 7.054016 6.498859 11.700476 10.436211 11.827402 11.051658 11.042617 5.912031 5.917513 5.088513