Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01332 ATGGCAACTCTTCATTTTGTTCCTTCCGCTTTCTCCCTACCAAAACAAAAGCAACCCATCAAGCTTTCCTCAGTCAGACCCACTACTCAGATAAGCTGTTCACGACGGCGCTTGGTGGTCCGGTCGTACAAAGTAGTGATTGAGCACGAGGGGCAGACTACCGAGCTTGAGGTCGATCCCGATGAGAGCATATTGAGCAGTGCCTTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTTTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGCACAAGGCTATTCGCTTCTATGTGTGGCTTATCCTCGCTCAGATTGCCACATTAAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA 435 49.66 MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10083378 10083812 + CsaV3_3G013320.1 Csa03g01332 522237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01332 144 PANTHER FERREDOXIN 1 139 - -
Csa03g01332 144 Pfam 2Fe-2S iron-sulfur cluster binding domain 48 120 IPR001041 GO:0051536
Csa03g01332 144 Gene3D - 40 142 IPR012675 -
Csa03g01332 144 SUPERFAMILY 2Fe-2S ferredoxin-like 41 138 IPR036010 GO:0051536
Csa03g01332 144 PANTHER FERREDOXIN C 1, CHLOROPLASTIC 1 139 - -
Csa03g01332 144 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 42 134 IPR010241 GO:0009055|GO:0022900|GO:0051537
Csa03g01332 144 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 43 132 IPR001041 GO:0051536
Csa03g01332 144 CDD fer2 45 127 IPR001041 GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01332 K02639 petF; ferredoxin - csv:101206257 284.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01332 Csa-Chr3:10083378 Csa06g00423 Csa-Chr6:3675463 8.73E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g504 . . . . . . . . . . . Cma14g01705 . Car14g01540 . . Cpe03g01433 . . . . . . . . . . . . . . . . Cone7ag0252 . Lsi05g01602 . . Cme06g00612 . Blo07g00219 Bda11g00577 . . Bpe13g00606 . Bma06g01556 . . Cmo14g01748 . . . . . . . . . . . . . Cla05g00546 Cam05g0596 Cec05g0606 Cco05g0603 Clacu05g0593 Cmu05g0563 Cre05g0632 . Csa03g01332 Chy06g00583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011622 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01332 Csa_Chr03 FPKM 2.596252 4.404164 0.40636 0.858888 16.433252 15.497182 15.755218 0.207228 0.359032 0.293017