Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01353 ATGGGGAAGAAGAAGCATAAGCGGCCGGAACAGGAATCGGAGGCGCTTGACAGAGATGACTTCGAAGCTAATCATGAAACGGAGCTCATTAATGGATGCTCTCCTGAGAAAAAGAAGAAGAAGAAGAAGAAGAAAGTTGAGAATGGTTCAATCGAGGCAGAGAAGAGGAAACCGATTTCCAAACCTACAGTGAGCATTGCGGTTTCCGGTTCCATCATTGATAATGCTCAATCCCTGGAGCTTGCCACCAGATTGGCTGGTCAAATTGCTCGTGCGGCAACAATATTTCGAATTAACGAGGTGGTGGTATTTGACAGTGGAAGGAGTTCAACGACTGGCTCAGAGGTTGCGGCAGCGAACAATTCAGATGAGGATGAAAGTGGCGCTGCTTTCCTAATAAGGATCTTAAAATATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTCCCAAAGCATAACAATTTAAGATTTGTGGGGATGTTGCCCCCTCTTGATGCCCCTCACCATTTGCGCAAGCACGAATGGGGTCCCTATCGAGAAGGTGTTACCCTGAAAGAAAGAGCTCCAGATGCTAAAGGAACATCGGTTGATGTTGGTTTGAGTAAGAATGTTGTTGTTGATGAAATACTTGAACCTGGAACAAGAGTAACGGTAGCTATGGGAACAGATCGCAATTTGTTTTCTGATCTGCCCCGCCAGGTGGTCTCATCCTCAAAGCCTGTGGAAGAAGGGCTTTACTGGGGTTATAGAGTGCGATATGCTTCTTCTCTGAGTGCAGTTTTTAAGGAGAGTTCATACGAGGGTGGTTACGATCATTTGATTGGTACCTCAGAGCACGGAATGGTTATAAAGTCCTCAGAACTAACACTGCCTCCTTTCAGGCATCTATTAATTGCCTTTGGTGGACTTGCCGGTTTAGAAGAGAGCATTGAGGAAGACAACAACTTCAAGAGTAAAAATGCTCACGAGATCTTCTCATCATACTTGAATACATGTCCACTGCAAGGAAGCCGAACAATTCGAACAGAGGAGGCAATATTCATCTCTCTCCAGTATTTCCAAGAACCAATAAACAAGGCAATGCAGATTGCAGCAGTAGATTAA 1107 44.53 MGKKKHKRPEQESEALDRDDFEANHETELINGCSPEKKKKKKKKKVENGSIEAEKRKPISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRINEVVVFDSGRSSTTGSEVAAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHHLRKHEWGPYREGVTLKERAPDAKGTSVDVGLSKNVVVDEILEPGTRVTVAMGTDRNLFSDLPRQVVSSSKPVEEGLYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGMVIKSSELTLPPFRHLLIAFGGLAGLEESIEEDNNFKSKNAHEIFSSYLNTCPLQGSRTIRTEEAIFISLQYFQEPINKAMQIAAVD* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10202714 10207650 - CsaV3_3G013530.1 Csa03g01353 522258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01353 368 MobiDBLite consensus disorder prediction 1 56 - -
Csa03g01353 368 Gene3D - 64 352 IPR029026 -
Csa03g01353 368 MobiDBLite consensus disorder prediction 1 35 - -
Csa03g01353 368 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 5 363 IPR003750 -
Csa03g01353 368 Gene3D - 174 239 IPR012340 -
Csa03g01353 368 CDD HsC9orf114-like 63 354 IPR003750 -
Csa03g01353 368 SUPERFAMILY alpha/beta knot 61 355 IPR029028 -
Csa03g01353 368 Pfam Putative RNA methyltransferase 63 353 IPR003750 -
Csa03g01353 368 SUPERFAMILY Nucleic acid-binding proteins 168 249 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01353 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] - csv:101207949 716.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01353 Csa_Chr03 FPKM 11.112263 13.76123 48.252007 53.354359 21.991426 18.153595 25.449755 34.711731 40.364975 35.90395