Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01356 ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGACAGGTTCTGGGAAGACACTGACATATTTGCTGTTGATATTTTCTGTAATCAACGCTAAAAAATCAGCTGTTCAAGCATTGATTGTAGTACCCACACGGGAGTTAGGAATGCAAGTTACAAAAGTTGCTAGGATGTTAGCCGCCAAGCCTGCTGCATCTGAAGATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGCAGATCCCCCTGAAATACTGGTGGCGACTGTAGGAAGCTTGTGCCAAATGGTAGAGAGACAATTTCTTGACCTTGGTTCATTGAATGTGCTGGTAATTGATGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACGTCATATTCTTCATTCAGTAACCGTCAGACGATTTTTGCAAGTGCATCAATTCCGCAGCATAGGCATTTTCTTCATGATTGTATACAGCAGAAGTGGACCAAGAGTACTGTTGTTCATATTCATATTAACTCAACTCAGCCCATGCCATCATGTTTACTGCATAGATTTGTGACATGTGAGAAGAACAAAAAGCATCAAACCCTCCTGACCTTGTTACTAACAGATATTCCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAAGTCAAAGAAGGCCGGAAAGATTCCACCAACAACCTTGATGATTGATTTCTTGAAGGCCTCATATGGTGGTTGTTCTGACGTCATTCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCTTCTTCCCTGTCGGAACTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGATTTGCCTGAAACAACCCATATATACAACTTCGATCTGCCTCGATGTGCTATTGACTATCTTCATCGAGCTGGACGGACAGGTAGGAAACCATTTTCTGAGGAGAAATGTGTGGTTACTAATCTTATAACATCAGAAGAGAGGTTTGTTTTGCAAAAATTTGAAAATGAACTGCTCTTTATCTGTGAGGAGGTGGTTGTTTAG 1422 42.33 MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10232396 10236702 - CsaV3_3G013560.1 Csa03g01356 522261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01356 473 Pfam DEAD/DEAH box helicase 98 271 IPR011545 GO:0003676|GO:0005524
Csa03g01356 473 SMART helicmild6 357 437 IPR001650 -
Csa03g01356 473 CDD SF2_C_DEAD 304 449 - -
Csa03g01356 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 287 IPR014001 -
Csa03g01356 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 450 IPR027417 -
Csa03g01356 473 CDD DEADc 85 271 - -
Csa03g01356 473 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 42 472 - -
Csa03g01356 473 Gene3D - 44 284 IPR027417 -
Csa03g01356 473 Pfam Helicase conserved C-terminal domain 316 435 IPR001650 -
Csa03g01356 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 473 IPR001650 -
Csa03g01356 473 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 472 - -
Csa03g01356 473 SMART ultradead3 93 295 IPR014001 -
Csa03g01356 473 Gene3D - 302 470 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01356 - - - csv:101202973 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01356 Csa-Chr3:10232396 Csa03g04085 Csa-Chr3:35806219 5.79E-35 dispersed
Csa03g01356 Csa-Chr3:10232396 Csa03g04064 Csa-Chr3:35570090 2.22E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g450 . . . . . Bpe14g01313 . . . . Cma06g01426 . Car06g01230 . . . . . . . . . . . . . . . . . . . . Cone7ag0225 . . . . . . . . . . . Bma02g00688 . . Cmo06g01430 . . . . . . . . . . . . . . . . . . . . . . Csa03g01356 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005533 1 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01356 Csa_Chr03 FPKM 0.0 0.0 1.394245 2.161509 1.358259 2.237272 2.381087 0.0 0.0 0.214482