Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01360 ATGGCGGGCTCTGTCGTCCAATCCAGTCGATCGAGGGACCTCGATAAGCTCCTTCTTAGGCCCGGTAATCTCATCGGCGCCAATTTCGAGCCGGGTTCTCAATTGAGGGATGATCTTCAACAGTATGTGAAGGTGTTAGTCATAGGAGCTGGGGGGTTGGGCTGCGAGCTCCTGAAAGACTTGGCTTTGTCGGGCTTTCGGAATCTGGAAGTCATCGACATGGATCGCATCGAAGTTACTAATCTCAATCGTCAGTTTCTCTTCAGGCTTGAAGATGTTGGTAAGCCAAAAGCTGAGGTGGCTGCAAAACGTGTTATGGAGAGAGTTAGTGGTGTCAATATTCTGCCACATTTTTGCCGGATTGAGGACAAAGAAATTGAATTTTACAACGATTTTCACATAATCGCACTTGGTCTTGATTCAATTGAAGCTCGAAGTTACATCAATTCTGTTGCTTGTAGCTTCCTTGAGTATGATTCTGATGATAATCCATTAGAAGAAACAATTAAACCAATGGTAGATGGTGGAACTGAAGGCTTCAAGGGGCATGCAAGGGTAATTTTACCAGGGGTCACACCTTGCTTCGAGTGTACCATCTGGCTTTTTCCACCTCAAGTAAAGTTTCCATTATGTACTCTAGCAGAAACTCCTAGAACTGCTGCTCATTGTATCGAATATGCTCATCTAATTAAATGGGATGAGGTCCATAGTGGAAAATCTTTTGATCCTGATGATTCCGAACACATGAAATGGGTTTACAGTGAGGCTCTTAAGAGGGCTGAGCTTTTTGGCATTCCGGGAGTTACATATTCACTAACTCAGGGTGTTGTTAAGAATATCATACCTGCTATTGCTTCCACCAATGCAATTATATCAGCTGCATGTGCACTGGAAACGTTGAAGATTGTATCAGGATGCAGTAAAACTCTATCCAACTACTTAACATATAATGGTGCTGAAGGTCTCCACACTAAAGTGACCGAGTTTGTGAAAGATAAGGACTGTCTTGTTTGTGGTCCAGGCGTTCTTATTGAGCTGGATTCTTCCATTACTTTACAGAAGTTCATTGACCTGCTAGAAGATCATCCCAAACTCTTGTTATCAAAGGCAAGTGTCACGCATCGAGGGAAGAATCTATACATGCAGGCACCTCCTGTACTTGAAGAGATGACCAGATCAAATTTGGGTGTTCCACTTTTTGACTTGATGGGTAAAGTTTTGAAGGACGTAGTCCATGTGACTGGTGTGGCTTCTAAGAATGATAAGAAAACTTCCTGTCTTCGAAAATTACGTGTGGCTTTTAAGGGGGTTGACGGTGTTACGGATATGGACACTGCAAGTGGGGCTTAA 1350 43.26 MAGSVVQSSRSRDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNILPHFCRIEDKEIEFYNDFHIIALGLDSIEARSYINSVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDSEHMKWVYSEALKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDKDCLVCGPGVLIELDSSITLQKFIDLLEDHPKLLLSKASVTHRGKNLYMQAPPVLEEMTRSNLGVPLFDLMGKVLKDVVHVTGVASKNDKKTSCLRKLRVAFKGVDGVTDMDTASGA* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10253748 10258012 - CsaV3_3G013600.1 Csa03g01360 522265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01360 449 Pfam E2 binding domain 345 434 IPR014929 GO:0019781|GO:0045116
Csa03g01360 449 Gene3D - 343 429 - -
Csa03g01360 449 Gene3D - 41 342 - -
Csa03g01360 449 Pfam ThiF family 33 336 IPR000594 -
Csa03g01360 449 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 9 414 IPR045886 -
Csa03g01360 449 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 44 406 IPR035985 GO:0008641
Csa03g01360 449 ProSitePatterns Ubiquitin-activating enzyme active site. 209 217 IPR033127 -
Csa03g01360 449 PRINTS Ubiquitin-activating enzyme E1 signature 46 70 IPR000011 GO:0008641|GO:0036211
Csa03g01360 449 PRINTS Ubiquitin-activating enzyme E1 signature 436 449 IPR000011 GO:0008641|GO:0036211
Csa03g01360 449 PANTHER NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT 9 414 IPR030468 GO:0019781|GO:0045116
Csa03g01360 449 SMART E2_bind_2 344 435 IPR014929 GO:0019781|GO:0045116
Csa03g01360 449 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 211 279 IPR023318 -
Csa03g01360 449 CDD Uba3_RUB 44 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01360 K10686 UBA3, UBE1C; NEDD8-activating enzyme E1 [EC:6.2.1.64] - csv:101209336 884.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01289 Csa-Chr2:12545593 Csa03g01360 Csa-Chr3:10253748 1.75E-08 dispersed
Csa03g01360 Csa-Chr3:10253748 Csa06g01399 Csa-Chr6:11955792 3.38E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01360 Csa_Chr03 FPKM 0.215539 0.376119 8.03374 7.839943 0.708694 0.989044 0.522147 0.715178 0.349195 0.800843