Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01367 ATGGCCGCCTCCACTTCCTTCTCCCTCTTCTCCTCCATTCTCTTTCTCCTCTTCTCCATTTCCATTGCCTCAACTTCCTTCACCCCCAGATCCCTCGTTCTCCCTGTCACCAAACATCCATCTCTCCAATACATCATCCAGATCCACCAACGAACTCCTCTGGTTCCGGTCAATCTCACAGTGGATCTCGGCGGTTGGCTAATGTGGGTCGACTGTGACCGTGGCTTCGTTTCTTCCTCCTACAAACCCGCTCGTTGTCGCTCCGCCCAATGCTCCCTCGCCAAATCCATTTCCTGCGGCAAATGCTATTTGCCGCCCCACCCCGGCTGCAACAACTACACTTGCAGCCTTTCCGCCCGAAACACCATCATCCAACTATCCTCTGGCGGAGAAGTCACTTCCGACCTTGTCTCTGTTTCTTCCACCAATGGCTTCAATTCAACCAGAGCCCTCTCCGTCCCCAATTTCCTGTTCATCTGCAGCTCGACTTTCCTCCTCGAAGGCCTGGCCGGCGGTGTAACTGGAATGGCAGGATTCGGAAGAACCAGAATATCTCTACCATCCCAATTCGCCGCCGCCTTCAGCTTTAGCCGGAAATTCACCATGTGCTTGAGCGGCTCCACTGGATTCCCTGGTGTCATCTTCTCCGGTTACGGCCCATACCATTTCTTACCCAACATCGACTTAACAAATTCTCTCACTTATACCCCGTTGCTCATCAACCCCGTTGGCTTCGCCGGGGAAAAATCATCGGAGTATTTCATCGGCGTTAAATCCATCGAATTCAACTCCAAAACCGTCCCACTAAACACCACTCTTCTGAAAATCGACAGCAACGGAAACGGTGGTACAAAAATCAGCACTGTCAATCCATACACCGTACTGGAAACATCAATTTACAGGGCGTTGGTGAAAACATTCACATCGGAGCTTGGGAACATTCCAAGAGTGGCGGCGGTGGCGCCATTTGAGGTCTGTTATAGTTCAAAAAGCTTTGGAAGTACTGAATTGGGGCCGAGTGTGCCATCGATTGATTTGATTTTGCAGAACAAAAAAGTGATTTGGAGAATGTTCGGGGCGAACTCGATGGTGGTTGTGACCGAGGAGGTATTATGCTTGGGATTTGTTGAGGGTGGAGTGGAAGCAGAAACGGCGATGGTGATTGGAGGGCACCAAATAGAGGATAATTTGCTTGAATTTGATTTGGCAACTTCTAGGCTTGGATTTAGCTCAACTTTACTGGGACGAAACACTAATTGCGCTAATTTTAATTTTACTTCAACTGCTTGA 1290 49.46 MAASTSFSLFSSILFLLFSISIASTSFTPRSLVLPVTKHPSLQYIIQIHQRTPLVPVNLTVDLGGWLMWVDCDRGFVSSSYKPARCRSAQCSLAKSISCGKCYLPPHPGCNNYTCSLSARNTIIQLSSGGEVTSDLVSVSSTNGFNSTRALSVPNFLFICSSTFLLEGLAGGVTGMAGFGRTRISLPSQFAAAFSFSRKFTMCLSGSTGFPGVIFSGYGPYHFLPNIDLTNSLTYTPLLINPVGFAGEKSSEYFIGVKSIEFNSKTVPLNTTLLKIDSNGNGGTKISTVNPYTVLETSIYRALVKTFTSELGNIPRVAAVAPFEVCYSSKSFGSTELGPSVPSIDLILQNKKVIWRMFGANSMVVVTEEVLCLGFVEGGVEAETAMVIGGHQIEDNLLEFDLATSRLGFSSTLLGRNTNCANFNFTSTA* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10282592 10284652 - CsaV3_3G013670.1 Csa03g01367 522272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01367 429 CDD xylanase_inhibitor_I_like 49 413 IPR033868 -
Csa03g01367 429 Gene3D Acid Proteases 20 217 IPR021109 -
Csa03g01367 429 Pfam Xylanase inhibitor C-terminal 252 410 IPR032799 -
Csa03g01367 429 ProSiteProfiles Peptidase family A1 domain profile. 44 410 IPR033121 -
Csa03g01367 429 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 429 - -
Csa03g01367 429 Pfam Xylanase inhibitor N-terminal 44 217 IPR032861 -
Csa03g01367 429 PANTHER ASPARTYL PROTEASE-RELATED 10 429 IPR001461 GO:0004190|GO:0006508
Csa03g01367 429 SUPERFAMILY Acid proteases 38 420 IPR021109 -
Csa03g01367 429 Gene3D Acid Proteases 219 427 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01367 - - - csv:101210239 828.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01367 Csa-Chr3:10282592 Csa07g01733 Csa-Chr7:17777132 1.46E-95 dispersed
Csa03g01366 Csa-Chr3:10280224 Csa03g01367 Csa-Chr3:10282592 0 tandem
Csa03g01367 Csa-Chr3:10282592 Csa03g01368 Csa-Chr3:10284970 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g436 . . . Bda08g00394 . . . Bma05g00939 . . . . . . . Cpe08g00244 . . . . . . . . . . . . . . . . . . . . . . Cme06g00641 . . . . Bpe05g00757 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01367 Chy06g00610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002462 3 1 0 5 3 2 2 2 1 3 1 2 2 3 3 2 2 4 2 2 3 1 1 1 1 1 2 2 1 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01367 Csa_Chr03 FPKM 21.228224 22.163837 18.73278 21.522657 13.317801 12.782181 14.165321 14.740009 14.285144 13.908818