Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01369 ATGGCTCATATTGCTGTGGAGAGAAATAGAAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTAACCCCTTCTTTCTATATCAAAAGGGGAGATCAAGCCTCCATTATTGGGGGAGTCATAGAGTTCATCAAGGAGTTGCATCAAGTATTGCAATCCTTGGAGTCAAATAAACGAAGGAGGAAGAGTATAAGCCCTAGCCCCGGTCCGAGCCCAAAGGCACAGTTGGTGGCTTTGGGATCTGATAATAGCCCGTTTGGATTCGAAAATGGAGTTGATGTCGGAGCATGTTGCAATTCATCGGTTGCAGATGTTGAAGCAAAGATTTCGGGTTCGAACGTGGTTTTGAAGATCATTTCTCGACGGATTCCCGGCCAACTTCCAAAGATGATTGGTGTCTTCGAGAGGCTGTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACGGTTCTATACTCTTTTGTTGTCAAGATAGGACTTGAATGTCAGCTAAGTTTGGAGGAATTAGCTTTTGAAGTTCAACAAAGCTTTTGCTCTCAACTTTATTTATGCCAGTGA 573 42.58 MAHIAVERNRRRQMNEHLRVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPKAQLVALGSDNSPFGFENGVDVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLPKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAFEVQQSFCSQLYLCQ* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10293079 10294740 + CsaV3_3G013690.1 Csa03g01369 522274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01369 190 Gene3D - 1 66 IPR036638 GO:0046983
Csa03g01369 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983
Csa03g01369 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Csa03g01369 190 SMART finulus 4 55 IPR011598 GO:0046983
Csa03g01369 190 PANTHER TRANSCRIPTION FACTOR MUTE 1 187 - -
Csa03g01369 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 187 IPR044283 GO:0003700|GO:0010052
Csa03g01369 190 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01101 Csa-Chr3:8707121 Csa03g01369 Csa-Chr3:10293079 2.58E-52 dispersed
Csa03g01369 Csa-Chr3:10293079 Csa03g04599 Csa-Chr3:40003473 3.44E-35 dispersed
Csa03g01369 Csa-Chr3:10293079 Csa03g00171 Csa-Chr3:1295970 7.43E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31185 PF00010 HLH 4.50E-08 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01369 - - csv:101203445 361.303