Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01372 | ATGGGTATTTCGTGGAGTAACAGAAGAAGAAACAACTACCTTCAAAACCCACCTCCACCTCCTCCTCCACCCTACCTTTCTTCTTCCTCTTTCTACTACCCCTCTGAACCCCAATCTCTTTCTCCTGCTCCACCTCCGCCGCCACCTCCGCCGCCGCTTCAGACTCATCAGTTTACTAATTCCCACCCTCCTCCACCGCACAGCCACCCTTACAGTTCAACTTCTCAGACACTACCTCTGCCACCGATTCCTCATCCTCCTCCCCCTGCCCCTGCTCCTCACTCCTATTACTTCTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTTACCCTTATTATGCTAATCAGAGTAATGGATGGTCTCAAGTTCGGCCGCCCATGGGTCCACCGTTGCTTCCGCCACCGCCTTTGCCAATTGTGGAGCATCGGCAAGCGAAGAAGGTTAGAAATGATGTGAATGTACATAAAGATACTCTAAAGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTTGATGCGTTGTATGATGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAATTGTAGGTTTGTTCCAGTATATCCCGATGCCTTCAAACCAGTAAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCCGTTGGAACTGGCTTTGACTTGGGATTTTTTGACTTGGATGACCTCTCAAAACCTTCACCTGCAGAAGACACGTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCATCTCAGTCCGATGACGAACGAATTGGTGAACCTCATCGAGATAATTCACACATGCAGATAACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCCTTTCCAGGTTAGAGTGATTAGGCAACTACTGTGGATTGATGGAGTCAGATATGAGCTGCGTGAAATATTTGGCATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACTGCTGTACTACCATGCCGACATTTGTGCATGTGCAGTGAATGTGCCAAGGAACTGAGGCTTCAATCCAATAAATGTCCTATTTGCCGTCAACCAATTGAAGAACTAATAGAAATCAGGATAAACAATAGCGACCAATAA | 1197 | 45.86 | MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPAPPPPPPPPPLQTHQFTNSHPPPPHSHPYSSTSQTLPLPPIPHPPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQVRPPMGPPLLPPPPLPIVEHRQAKKVRNDVNVHKDTLKIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDERIGEPHRDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIRINNSDQ* | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10311668 | 10316847 | - | CsaV3_3G013720.1 | Csa03g01372 | 522277 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01372 | 398 | SMART | ring_2 | 343 | 381 | IPR001841 | - | |
Csa03g01372 | 398 | MobiDBLite | consensus disorder prediction | 38 | 70 | - | - | |
Csa03g01372 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 343 | 382 | IPR001841 | - | |
Csa03g01372 | 398 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 397 | - | - | |
Csa03g01372 | 398 | SUPERFAMILY | RING/U-box | 342 | 389 | - | - | |
Csa03g01372 | 398 | PANTHER | MAHOGUNIN | 1 | 397 | IPR045194 | GO:0061630 | |
Csa03g01372 | 398 | Pfam | Zinc finger, C3HC4 type (RING finger) | 341 | 387 | - | - | |
Csa03g01372 | 398 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Csa03g01372 | 398 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
Csa03g01372 | 398 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 342 | 382 | IPR045195 | - | |
Csa03g01372 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 328 | 392 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01372 | Csa-Chr3:10311668 | Csa03g03269 | Csa-Chr3:29883079 | 1.29E-87 | dispersed | |
Csa03g01372 | Csa-Chr3:10311668 | Csa02g01059 | Csa-Chr2:10277417 | 1.43E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01372 | - | - | csv:101203938 | 710.294 |