Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01372 ATGGGTATTTCGTGGAGTAACAGAAGAAGAAACAACTACCTTCAAAACCCACCTCCACCTCCTCCTCCACCCTACCTTTCTTCTTCCTCTTTCTACTACCCCTCTGAACCCCAATCTCTTTCTCCTGCTCCACCTCCGCCGCCACCTCCGCCGCCGCTTCAGACTCATCAGTTTACTAATTCCCACCCTCCTCCACCGCACAGCCACCCTTACAGTTCAACTTCTCAGACACTACCTCTGCCACCGATTCCTCATCCTCCTCCCCCTGCCCCTGCTCCTCACTCCTATTACTTCTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTTACCCTTATTATGCTAATCAGAGTAATGGATGGTCTCAAGTTCGGCCGCCCATGGGTCCACCGTTGCTTCCGCCACCGCCTTTGCCAATTGTGGAGCATCGGCAAGCGAAGAAGGTTAGAAATGATGTGAATGTACATAAAGATACTCTAAAGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTTGATGCGTTGTATGATGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAATTGTAGGTTTGTTCCAGTATATCCCGATGCCTTCAAACCAGTAAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCCGTTGGAACTGGCTTTGACTTGGGATTTTTTGACTTGGATGACCTCTCAAAACCTTCACCTGCAGAAGACACGTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCATCTCAGTCCGATGACGAACGAATTGGTGAACCTCATCGAGATAATTCACACATGCAGATAACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCCTTTCCAGGTTAGAGTGATTAGGCAACTACTGTGGATTGATGGAGTCAGATATGAGCTGCGTGAAATATTTGGCATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACTGCTGTACTACCATGCCGACATTTGTGCATGTGCAGTGAATGTGCCAAGGAACTGAGGCTTCAATCCAATAAATGTCCTATTTGCCGTCAACCAATTGAAGAACTAATAGAAATCAGGATAAACAATAGCGACCAATAA 1197 45.86 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPAPPPPPPPPPLQTHQFTNSHPPPPHSHPYSSTSQTLPLPPIPHPPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQVRPPMGPPLLPPPPLPIVEHRQAKKVRNDVNVHKDTLKIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDERIGEPHRDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIRINNSDQ* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10311668 10316847 - CsaV3_3G013720.1 Csa03g01372 522277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01372 398 SMART ring_2 343 381 IPR001841 -
Csa03g01372 398 MobiDBLite consensus disorder prediction 38 70 - -
Csa03g01372 398 ProSiteProfiles Zinc finger RING-type profile. 343 382 IPR001841 -
Csa03g01372 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 397 - -
Csa03g01372 398 SUPERFAMILY RING/U-box 342 389 - -
Csa03g01372 398 PANTHER MAHOGUNIN 1 397 IPR045194 GO:0061630
Csa03g01372 398 Pfam Zinc finger, C3HC4 type (RING finger) 341 387 - -
Csa03g01372 398 MobiDBLite consensus disorder prediction 1 87 - -
Csa03g01372 398 MobiDBLite consensus disorder prediction 14 28 - -
Csa03g01372 398 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 342 382 IPR045195 -
Csa03g01372 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 392 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01372 Csa-Chr3:10311668 Csa03g03269 Csa-Chr3:29883079 1.29E-87 dispersed
Csa03g01372 Csa-Chr3:10311668 Csa02g01059 Csa-Chr2:10277417 1.43E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01372 - - csv:101203938 710.294