Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01387 ATGGATCTCTTCCCCGTCTTCTCCGGCGACAGAGCGTCGGAACAGTCCGATTTCGAGGAGGAACACGACGACGACGACGACATTGGTTCAGTTTCTAATCTCTCCCCTCCAAGTACCAGTTGGAGCTTCGGTGGTCTGATTAAGACTCTCGCGACCAAGTCGGAATCCGTAATTTCAAACTACCGCCGTGATCTTGAGGAATTAGGATCTGGATTGAGGAAGGAAACGTCGGTGATCCGGGAAGTCGCATCTCGTGCCGTGAAGGATCTTCCGACGACGCTCGATGTCGGTGCGTCCGTTGCGCAAGAATCGCTGGAGTCTGTCGGCCAAGCTATAGATGATATCGGAAGTGCCGTCTGGAAATCGACTTCTAAGATCATCTCACACGGTAGGGATACGTTTTTAGCTTCTGATTTAGTTTCTGAAAATCATGAAAATAACAGCGATATTGTGATTTCGTCAAATCAATTAAACAAACCTAGAAATATTGAATTCAAACAGTACAATAGATTCAATACACAATTGGTTGCGATTCAGCGAGACCTAAATACATATTTAGAGGAACCAAATGATATAGAGAATTACAAGAACTGGAAATTAGGGTTTGTATTGGAAGAGAAGGAAAAAGAAATTGAGGATTTGGTTAAAGAGAGTGATGATGTTCGGGAAACATATCGGACGGTGGTTCCAAGCAGAATCAGCCATGATATCTTCTGGAGTAGATACTTTTACAATTTTCACAAGATTAAGCAAGCAGAAGAAGCTAGAGTTAAGCTTGTGAAGAGAGCCATATCTGCAAAAGATGAAGAAGAATTGAGTTGGGATGTTGAGGAAGATGATGATAAAGAAGGAGGTGTGAGTGGTGAGAGTTCAGAGAATGGGAAAACAATAGAGGGAAATATGAAGAAGATTGACGTTGATGATAGTTTGAAGAAAATGGGTGGAGATGGAAGAGGAGAAAGTGTGGATTCTTCTTGCAAAGACAGCGACATTTCAATAATTTCAAGTCAGGGTGGTGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAGAAGTTGGATGGGATGAAATTGAAGAGATTGGAACCATTGAAGAGGCTAAAGGCAAGGTTTTTGCTTCAGGTAGTGTACAAAAATTTGGTTTGAACAAGAAGTTGAGCGTGGCAGAGGACGAGGAAGATCTGAGTTGGGATATTGAGGATGAAGATGAACCTACTAAATCATGA 1236 41.83 MDLFPVFSGDRASEQSDFEEEHDDDDDIGSVSNLSPPSTSWSFGGLIKTLATKSESVISNYRRDLEELGSGLRKETSVIREVASRAVKDLPTTLDVGASVAQESLESVGQAIDDIGSAVWKSTSKIISHGRDTFLASDLVSENHENNSDIVISSNQLNKPRNIEFKQYNRFNTQLVAIQRDLNTYLEEPNDIENYKNWKLGFVLEEKEKEIEDLVKESDDVRETYRTVVPSRISHDIFWSRYFYNFHKIKQAEEARVKLVKRAISAKDEEELSWDVEEDDDKEGGVSGESSENGKTIEGNMKKIDVDDSLKKMGGDGRGESVDSSCKDSDISIISSQGGEEEEEEEKEEEKEEEEVGWDEIEEIGTIEEAKGKVFASGSVQKFGLNKKLSVAEDEEDLSWDIEDEDEPTKS* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10398188 10400106 - CsaV3_3G013870.1 Csa03g01387 522292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01387 411 MobiDBLite consensus disorder prediction 270 358 - -
Csa03g01387 411 ProSiteProfiles BSD domain profile. 198 250 IPR005607 -
Csa03g01387 411 MobiDBLite consensus disorder prediction 337 358 - -
Csa03g01387 411 SUPERFAMILY BSD domain-like 168 256 IPR035925 -
Csa03g01387 411 PANTHER PROTEIN, PUTATIVE-RELATED 1 405 - -
Csa03g01387 411 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 405 - -
Csa03g01387 411 MobiDBLite consensus disorder prediction 271 285 - -
Csa03g01387 411 Coils Coil 204 224 - -
Csa03g01387 411 MobiDBLite consensus disorder prediction 296 325 - -
Csa03g01387 411 SMART wurzfinal6 198 250 IPR005607 -
Csa03g01387 411 Coils Coil 249 269 - -
Csa03g01387 411 Pfam BSD domain 198 254 IPR005607 -
Csa03g01387 411 MobiDBLite consensus disorder prediction 1 39 - -
Csa03g01387 411 MobiDBLite consensus disorder prediction 392 411 - -
Csa03g01387 411 Gene3D BSD domain 161 260 IPR035925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01387 - - - csv:101204914 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01387 Csa-Chr3:10398188 Csa07g01763 Csa-Chr7:18013831 1.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g407 . . . . . . . . . . Cma06g01446 Cma14g01667 Car06g01248 Car14g01501 Sed02g1283 Cpe08g00229 Cpe03g01407 Bhi01g00879 Tan10g0910 Cmetu01g2218 . Hepe05g1507 . . . . . . . . . . . Cone7ag0200 Cone4ag0193 Lsi05g01470 . . Cme06g00662 . . Bda11g00552 . . Bpe13g00632 . Bma06g01531 . Cmo06g01448 Cmo14g01712 . . . . . . . . . . . . . Cla05g00591 Cam05g0650 Cec05g0658 Cco05g0654 Clacu05g0643 Cmu05g0612 Cre05g0680 . Csa03g01387 Chy06g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009552 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 1 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01387 Csa_Chr03 FPKM 5.657897 5.919141 7.356216 6.851737 7.219816 6.759282 7.369416 8.906036 10.278284 9.491937