Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01389 ATGGGGTTCTCTCACATTTCGATTCCCATCGTCCTCCACACAAACACAAGTTTACATGGAAAGCATATACTAACGGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCATAAATACAATTTGGAGTACTCGCTCTTGACCCAGCGTGGCTACTATCCCGATTCCCCTGATAAAGAAAACCAAGATAATTTATGTGTTAGTACACAAATTCAAGGTAACCCAAATGTTCATATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAATTACTGTATAATGACTCTAGATTGTTGGAAGATCCCGTTAAGGCTTATAATTCAGCGTTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGTGGTACAACAGCTATTACTGTTCTTGTTATTGGGAATACACTTTATGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTTGCTGAGGATATGTCTCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTCGCTGGGGCGAGGGTTTTGACAATTGATCAAATTGACGGGTTTAGAGATCCGGATATTCAAGTTTGGGGTGATGAGGAGAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACACGGAGTGTAGGAGACAGTACAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCCAAACCATCTTTTCTTTGTCATTGCAAGCGATGGAGTTTTTGAGTTCCTCACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATAATGATCCACGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGATATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCCTCTCTAATTCAGGTGGTTCTGGAAGCGTTGGGCTGAATGGGGTCCGCATAAGGCATTCAAATTCAGAGCGGGGAACCTCTGAGATATCGGCTACCACCGGAACTTCAGAGGCCTTTCGCTCCTTCAGAAGTGATTTCTCAGATCTGCACGTCTCTCAGCATGTGGGTTTGATGAACAAAAGCACAGCAATTGTTGTTCCATCGCCTGCACAGCACCGACCATTAGAAGTGGAAGTGGGCTAA 1245 43.37 MGFSHISIPIVLHTNTSLHGKHILTGRSLESVRVPSHKYNLEYSLLTQRGYYPDSPDKENQDNLCVSTQIQGNPNVHIFGVFDGHGQFGMQCSNFVKDRVVQLLYNDSRLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVIGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIDGFRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSTAEKIGVTAVPEVSVVQLTPNHLFFVIASDGVFEFLTSQAVVDMAARYNDPRDACSAIAGESYKIWLEHENRTDDITIIIVHIKGLSNSGGSGSVGLNGVRIRHSNSERGTSEISATTGTSEAFRSFRSDFSDLHVSQHVGLMNKSTAIVVPSPAQHRPLEVEVG* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10409924 10414025 + CsaV3_3G013890.1 Csa03g01389 522294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01389 414 CDD PP2Cc 58 332 IPR001932 -
Csa03g01389 414 SUPERFAMILY PP2C-like 30 334 IPR036457 -
Csa03g01389 414 ProSitePatterns PPM-type phosphatase domain signature. 78 86 IPR000222 GO:0043169
Csa03g01389 414 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 21 412 - -
Csa03g01389 414 SMART PP2C_4 42 330 IPR001932 -
Csa03g01389 414 ProSiteProfiles PPM-type phosphatase domain profile. 42 332 IPR001932 -
Csa03g01389 414 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 21 412 - -
Csa03g01389 414 Gene3D - 30 334 IPR036457 -
Csa03g01389 414 Pfam Protein phosphatase 2C 67 308 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01647 Csa-Chr1:12225796 Csa03g01389 Csa-Chr3:10409924 5.28E-92 dispersed
Csa03g01389 Csa-Chr3:10409924 Csa06g01632 Csa-Chr6:14302753 3.72E-141 dispersed
Csa03g01389 Csa-Chr3:10409924 Csa06g00552 Csa-Chr6:4746163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01389 - - csv:101212684 787.719