Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01390 ATGTCGTATCAGGGTTTCGGAAAGGCTTCCGGACCAAGCGCACCCCCCAAACTTCAACTTTCTTTCGGAAATCCACCACCTCCTGATTCTGTTTCTCCCCTACGCGATTCTTCTAGGACTGTTTCACCTTCCCCTACAGTTGAGGATCAGCCAAAGGTGCAAGGAATTCTTCCCAACGTACAAGCTTATCAAGTTCGATCCACTTCAAAGCAATCTTATGATCTCGAATCAAATATTTTAACCGAATTTGGTAATGTTCAAGCACCGAAGAGAACCAAATCTCCTGAGCGTCTTCGGTCTGCACAGACTAACTTGCCAAGACCTTCTACCTCTCCTCCTAGATCATTTTCTAGGGCAAATGCTCATGAAGTTATGAGTTCCATGAGGACTACTGATGCTGAATCTGTAGCTAGTGTCCTTGTTCCCAAAAGAACAAGGTCGCCAACTTTGCCATCATCAGATCAAGTCTCTGGTCCCAATTTTTATCCTACTCATGATGACACTGAACGAGAAAGATTAGCTAAGGCAAAGAGACTTGCTCGCTTTAAGGTTGAATTAGATGATGTTACACAAAACAAAATGGGGGGCGTGGATGTAATGGATAATACAAATAGAAATGAATGTTCTACAACAGAAAGGGATAAATTCATGTCAAGTCAATCTTTGGACTCATCAAGAAATTTGGCTCATGGGAATTCTATTCCTGATAATGACGTGGAATCTTCAAGCATAATAATCGGACTCTGCCCAGATATGTGTCCAGAGTCAGAGAGGGGTGAACGAGAAAGGAAAGGTGATCTTGACCATTATGAGCGATTGGATGGTGATAGAAACCAAACTAGCAAATTGCTTGCAGTTAAGAAGTATACCAGAACAGCTGAGCGGGAAGCTATTCTTATAAGGCCTATGCCAGTTTTGCTGAAAACGATTGATTATTTGCTGGATTTATTAAGTCAACCCTACGATGAAAAGTTTTTAGGAATCTATAACTTTTTATGGGATAGGATGCGAGCTATTCGCATGGATCTGAGAATGCAACATCTTTTTAATGAAAATGCCATAACGATGCTGGAACAGATGATTCGTCTTCATATAATTGCAATGCATGAGTTATGCGAATTCTCGAAAGGTGAAGGCTTTGCTGAAGGATTTGATGCTCACCTTAACATTGAACAAATGAACAAAACATCAGTGGAATTGTTTCAAATGTATGATGATCACAGAAAGAGAGGCATTATTGTGCCTTCTGAAAAAGAATTTCGAGGTTATTATGCACTTCTCAAGCTGGACAAGCATCCTGGATATAAAGTTGAACCTGCAGAGCTCTCACTAGATCTTGCCAAGATGACTCCTGAGATGCGACAGACTGCAGAAGTCAAATTTGCTCGTGATGTTGCTAGAGCTTGTAGGACAAGTAACTTTATCGCATTCTTTCGGCTTGTGAGGAAAGCAAGTTATTTACAAGCATGCTTAATGCATGCTCACTTTGCAAAGCTACGAACACAGGCTCTTGCATCATTGCACTCTGGTGTTCAGAATAACCAAGGACTGCCAATTGCCCATGTCTGCAAGTGGATTGGGATGGAGGAAGAAGATATCGAAGGCCTTTTAGAGTATCATGGTTTTTCAATTAAGGTATTTGAAGAGCCTTATATGGTTCGTGAAGGTCCATTTTTAAATGGCGACAAAGACTTTCCTACCAAGTGTTCAAAACTTGTTCACATGAAGAGGTCAAGAATGATAGTAAATGACGTCTTACCGAAGAGTAAAACTGAATGCTTGATCAATGGTGCTACTAAAATGATCCCATTGACAAGGAAGAGTAAAAATGAACACTTGATCCCTGATGCTACCAAACAGATCCCGTTGACAAGGACTAAGAAGGAACCAAAAACATTTGCTTTTGAAAAGATTAGTTCTCCTCGTCCCATATCGACCAAAAAAGAAAGTTCCATTCATGAGATAGATGAAGAAATGACCGAGTTTGATGATCAGTTGATTCCAGTAGATCACAAGCAAGTGCAACCAAAGATTGAAACGTTGGAAGTTCGTCAATTACATGAAAATAAGTATAACCATGAGGAGAATGGTGGTCTCCTACAATCTAGCCCCAGATCATGCGAACCATTGAGGACTGAAGTTCAATTTGTTGGCAATCAAGGCTATGATGGTCTTTTCATGACCTCTCCAGTTGGGAGCAATTCTGCTAGGATGGGATTGCCTTTACCACTTGTATCAGATGCGCCACTTCAAATGATATCTGCTTCTGGATATAAACAAGCGCCACTTCAAAAGATATCTGCTTTTGGATATAATAATAATACAATTAGAAGTGTTGAACCCCAGATCATAGTCAATAATGTAATGGAAGACGAAGAAATTTTGAATGCTACTCAGGAAAGTAAAATTGATATTATCACAGACAGTTGTCCAGATGAAGAAATTGCAAATGCAAGACTCAAGTTGATCCTAAGGTTATGGAAACGCCGAGCTTTAAAGAGAAAACAATTACGTGAACAAAGATTATTAGCGGCTAAAGCTGCATTTGATATATTGTCAGTGGGACCACCAATCCAATTGAATAGCCATAAAATTCGAAGTAATGGTATATTCGACATTGATCACATCGTGAGTGAAAGATGGAAAAGGCAGAAAATGTCATGCTCCGTAGTTAATGTTTCAGAAGTGGTAGCTAGCATTCTAAGCAGAAGGAATGTGGATGGGAAGTGCGTTTGCTGGAAACTTGTTGTCTGCTCCCAAGGAACCCGTGATTCTCATTTTGTAGCAGGTTCCTGGTTGCTTTCGAAGCTTATGCCCTCTGAAGCTAATGATCTAGTTTTCTCATCTTCTTTTCTTTCCATTTGGAAGAGTTGGCTCTCAGGCATAACTGGTTTGGATTTAAGTTGTTTCTTGTCCATAGTTCGACATGCAAATTTTGATAATCTTCCAGAGACAGTGCATGGGGCTGGTGCAATCTTATTTGTTGCAACTGAAAGCATCCCTCTAGATCTTCAAAGAGTCCAACTGCATGAGCTGGTGGCGTCAATATCCTCTGGATCTTGTTTGCCCCTTCTGATTTTGAGTGATTTTGATGACGAGATCTCTGCCTCACTGGCAAACAAACTCGACTTATACAATATTGATAAATCAAGGATACACAGTTTTCAGATCGTTTCACTCTTAGATAACCCTCATCTGAGGCATTTGGGATTCTTCAGCGATGAGAAACTCAAGGAAGGATTGAAGTGGCTAGCAAATGAATCACCAACACAACCTGTTCTTCACCGAGTCAGAGTGCTTGACTTGATTATTTCCCACTTAGATTCGTCTATGAAGGTGCTTGATTCTATGAATGAAAAAGACGTTTCTCCAAACCACTGCATTTCAGCATTTAATCTAGCCTTGGATCAGTCAGTTGCAGATATTACAGCTGCAGTCAAGGCAAATCCTTCAAACTGGCCTTGCCCTGAGATCGCTTTGTTGGAGTCTTGTAGTGAACCAGCATTTGTAACCGATGCTTTGCCACCTGTAGGATGGAGTTTTGTAGAAAATGTTGAACCTCTTAAGCAGGCTTTGATGGACCTTAAGCTTCCAACTTTTCTTGATATTTCCTGGTTGACCAAAGTCTCAAATACGATCAAAGAGATACCTACCGTAAGAGACAACCTAGAAAGTTGCTTGAGATGCTATCTGACTAAAACCAGTGAGATCATGGTGCAACAACTTGCATTGGAAGAGGCTCATATAATGCTCCAAAAATGTGCTAAGCTTGAGCACCATAATTTCAACTATTCCATTGTTCCACGTTGGGTAACAATTTTTAGACGGATTTTCAATTGGAGGTTGAGGTGTTTTCCCAGCAGGTCCTCTTATGCTCATATTGTGAATTGCTGCCATGGTGCATCCGTATCGAGTAGCACCAGGCTCGAAAGTAGGGAACCGCCATTGTATCGTCCTAATCAACCACTTTTAGATGAAGTAATTGAAGTAGCTTTCAGTTCCCTCTTGATTAATCAAGAGAGAGATTTTCCAGAAGCTCATCAACCGCCTGTAACCACAACCTCAAATGGTAGGCCTCATGAAGTTGTGGTTGCAACAATCAATTTTCCAAATGATAATGGCTATAGAACTCAACAGATGGGTTTTGGTAGTCCCAATAGTGTAGCTAATTCGGATCGGGAACTAAATTGTGCCGGTAAAGAAGTAGTTGTAAGTGATAGAGGATATTCAGAAGCAGAAAGACTGAAGGAGTTGTTGGATCAGTGTAACAAACGGCAGAATGCCATAGAAAAAATGTTGTCTGTTTACTTCTAA 4314 40.54 MSYQGFGKASGPSAPPKLQLSFGNPPPPDSVSPLRDSSRTVSPSPTVEDQPKVQGILPNVQAYQVRSTSKQSYDLESNILTEFGNVQAPKRTKSPERLRSAQTNLPRPSTSPPRSFSRANAHEVMSSMRTTDAESVASVLVPKRTRSPTLPSSDQVSGPNFYPTHDDTERERLAKAKRLARFKVELDDVTQNKMGGVDVMDNTNRNECSTTERDKFMSSQSLDSSRNLAHGNSIPDNDVESSSIIIGLCPDMCPESERGERERKGDLDHYERLDGDRNQTSKLLAVKKYTRTAEREAILIRPMPVLLKTIDYLLDLLSQPYDEKFLGIYNFLWDRMRAIRMDLRMQHLFNENAITMLEQMIRLHIIAMHELCEFSKGEGFAEGFDAHLNIEQMNKTSVELFQMYDDHRKRGIIVPSEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTAEVKFARDVARACRTSNFIAFFRLVRKASYLQACLMHAHFAKLRTQALASLHSGVQNNQGLPIAHVCKWIGMEEEDIEGLLEYHGFSIKVFEEPYMVREGPFLNGDKDFPTKCSKLVHMKRSRMIVNDVLPKSKTECLINGATKMIPLTRKSKNEHLIPDATKQIPLTRTKKEPKTFAFEKISSPRPISTKKESSIHEIDEEMTEFDDQLIPVDHKQVQPKIETLEVRQLHENKYNHEENGGLLQSSPRSCEPLRTEVQFVGNQGYDGLFMTSPVGSNSARMGLPLPLVSDAPLQMISASGYKQAPLQKISAFGYNNNTIRSVEPQIIVNNVMEDEEILNATQESKIDIITDSCPDEEIANARLKLILRLWKRRALKRKQLREQRLLAAKAAFDILSVGPPIQLNSHKIRSNGIFDIDHIVSERWKRQKMSCSVVNVSEVVASILSRRNVDGKCVCWKLVVCSQGTRDSHFVAGSWLLSKLMPSEANDLVFSSSFLSIWKSWLSGITGLDLSCFLSIVRHANFDNLPETVHGAGAILFVATESIPLDLQRVQLHELVASISSGSCLPLLILSDFDDEISASLANKLDLYNIDKSRIHSFQIVSLLDNPHLRHLGFFSDEKLKEGLKWLANESPTQPVLHRVRVLDLIISHLDSSMKVLDSMNEKDVSPNHCISAFNLALDQSVADITAAVKANPSNWPCPEIALLESCSEPAFVTDALPPVGWSFVENVEPLKQALMDLKLPTFLDISWLTKVSNTIKEIPTVRDNLESCLRCYLTKTSEIMVQQLALEEAHIMLQKCAKLEHHNFNYSIVPRWVTIFRRIFNWRLRCFPSRSSYAHIVNCCHGASVSSSTRLESREPPLYRPNQPLLDEVIEVAFSSLLINQERDFPEAHQPPVTTTSNGRPHEVVVATINFPNDNGYRTQQMGFGSPNSVANSDRELNCAGKEVVVSDRGYSEAERLKELLDQCNKRQNAIEKMLSVYF* 1438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10415111 10425946 - CsaV3_3G013900.1 Csa03g01390 522295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01390 1437 MobiDBLite consensus disorder prediction 84 117 - -
Csa03g01390 1437 Pfam SAC3/GANP family 252 545 IPR005062 -
Csa03g01390 1437 PANTHER SAC3 FAMILY PROTEIN B 43 1437 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 145 162 - -
Csa03g01390 1437 Gene3D - 297 599 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 213 236 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 195 236 - -
Csa03g01390 1437 Coils Coil 1412 1432 - -
Csa03g01390 1437 ProSiteProfiles PCI domain profile. 389 577 IPR000717 -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 98 117 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 1 59 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 33 49 - -
Csa03g01390 1437 MobiDBLite consensus disorder prediction 145 166 - -
Csa03g01390 1437 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 43 1437 IPR045107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01390 K23719 SAC3; nuclear mRNA export protein SAC3 - csv:101205161 2815.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01390 Csa-Chr3:10415111 Csa05g02113 Csa-Chr5:24336508 2.37E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01390 Csa_Chr03 FPKM 11.463651 15.065359 13.455577 13.563858 8.230805 9.939304 7.833575 22.415522 19.540302 19.093229