Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01393 ATGTCTTCCTTAATGCATGGATCACTGCTGCAAACTATAGCAGATTGTGATCAAGGATTGTTGAGGAGGGGAAAGTACCATTTGGGTCATACCAATCTTCTCAAAGAAAAACATTCATCTTTGAGGGCAAACAGAGGTGGTAAGGGTAAAGGTATTTGCTGCCAAGATTTGCATATCAGTAGTCCAAAGCCAGAGAGACATGAGCCTTCCAACCGTCACGGTTCAAGAGCTGATGCAGTCCTCAGTCCTGTTATACCTACTACCAAAAAGAGAGTATTCACTTTTGGAAAAGGAAGGAGTGAGGGTAACAAGAGCATGAAGTCCTTGTTGGGAGGGAAGGGAGCAAACCTTGCTGAGATGGCAAGCATCGGGTTGTCCGTTCCACCTGGACTCACCATCTCAACTGAAGCATGCCAAGAGTACCAGGAAAATGGAAATAGATTACCAGATGGCTTGTGGGAAGAGATACTGGAAGGATTGGAAAGTATTGAAAAGGACATGGGAGCTGTTCTTGGAGATCCTTTAAAGCCTCTCCTTCTCTCGGTTCGATCTGGTGCTGCTATCTCAATGCCTGGAATGATGGATACTGTCCTTAACCTTGGATTAAATGACGAAGTGGTTGCTGGATTAGCTGACAAAAGTGGAGAGCGCTTTGCTTACGACTCTTATCGGCGCTTTCTAGACATGTTTGGAAACGTTGTGATGGACATTTCACATTCTTTGTTTGAGGAGAAGCTGGAACACTTGAAAATTGCAAAAGGAATTGAACTTGATACTGATCTAACCGCCTCTGATCTTAAGGAGCTTGTGGAACAGTACAAGGAGGTCTATGTCGAAGCTATGGGCGAAACGTTTCCTTCAGACCCAAAACAGCAGTTGCAGTTAGCTGTCAAAGCAGTTTTCAACTCTTGGGATAGCCCAAGGGCCAACAAATATCGAAGCATCAACCAAATTACTGGGTTGAAGGGAACTGCTGTGAACATTCAATCCATGGTGTTTGGAAACATGGGATCTACTTCTGGGACTGGAGTATTGTTCACTAGAAATCCAAGTACTGGTGAAAAGAAGTTATATGGAGAGTTCCTCATCAACGCTCAGGGTGAGGACGTAGTTGCTGGGATAAGGACACCTGAAGACTTGGACACCATGAAAGATCATATGCCCGAAGCTTACAAAGAGCTGGTTGAGAATTGTGAAATTTTAGAGAGACATTACAAAGACATGATGGATATTGAGTTCACAGTCCAAGAAAACAGGCTATGGATGTTGCAATGTCGTTCTGGAAAACGCACGGGTAAAGGTGCAGTGAAGATAGCTGTTGATTTGGTGGATGAAGGACTTGTTGACACTCGTACTGCTATTAAGATGGTTGAGCCACAACATCTCGACCAACTTCTTCATCCTCAGTTTGAAGATCCCTCTGCTTATAAGGACCAAGTAGTTGCAACAGGCTTGCCTGCATCTCCTGGTGCAGCAGTGGGGCAGGTAGTATTCAGTGCCGACGACGCTGAAGCCTGGCATGCTCAGGGAAAGAGTGTCATCTTGGTAAGGGCAGAGACCAGCCCAGAGGATGTTGGTGGCATGCATGCTGCTACTGGAATTTTGACAGCTAGAGGTGGAATGACTTCTCATGCTGCTGTGGTCGCTCGTGGATGGGGGAAATGCTGCGTTTCTGGTTGTTCAGATATCAGAGTAAACGACTCTGCGAAGGTTCTTGTCATTGGAGATTTGGTAATCAATGAAGGTGACTGGATATCCCTCAATGGCTCTACAGGTGAAGTGATATTGGGCAAGCAGCCACTCTCTCCTCCAGCTTTAAGTGGGGATTTGGAGATCTTTATGTCTTGGGCTGATCAAATAAGACGTCTTAAGGTTATGGCCAATGCTGACACTCCTGAAGATGCTCTTACAGCTCGTAACAATGGCGCCCAAGGAATCGGGTTGTGCAGGACAGAGCATATGTTCTTTGCATCTGATGAGAGGATCAGAGCTGTAAGAAAGATGATAATGGCAGTTACGGTCGAACAAAGGAAGTCAGCTTTGGACTTGTTATTACCTTATCAAAGATCCGATTTTGAGGGAATTTTCCGAGCAATGGATGGTCTTCCAGTGACTATTAGACTGTTGGACCCTCCACTCCATGAGTTCCTTCCAGAAGGGGATCTGGAAGAAATTGTCAAAGGACTAACTGCAGAGACTGGAATGAGTGAAGATGAAGTGTTTTCTAGAATCGAGAAGCTCTCGGAAGTTAACCCAATGCTCGGTTTTCGTGGTTGTAGGCTTGGGATTTCATACCCAGAGCTGACGGAAATGCAAGCTCGTGCTATCTTCCAGGCTGCTATCTCAATGAGCAGTCAAGGAATTAAAGTTTTGCCTGAGATAATGGTTCCATTAGTTGGAACACCACAAGAACTTAAACATCAAGTCAGCTCAATTCGCCGTGTTGCTGAGAAGGTGTTCTCAGAGATGGGTTCCTCCATAAGTTACAAAGTGGGAACCATGATTGAAATTCCTAGAGCTGCTCTGGTTGCAGATGAGATTGCAAAGGAAGCAGAGTTCTTCTCATTTGGGACCAATGATCTTACACAAATGACTTTTGGATACAGTAGAGATGATGTTGGCAAATTTCTTCCTATTTATATATCCCAAGGAATTCTGCAAAATGACCCCTTTGAGGTGCTTGACCAAAAAGGAGTTGGGCAACTGATCAAGCTAGCTACAGAAAAAGGGAGGGCAGCTAGGCCAAGTTTGAAGGTTGGCATTTGTGGAGAACATGGAGGAGAGCCTTCATCTGTTGCATTCTTTGCTGAGGCTGGACTTGACTATGTTTCTTGTTCTCCTTTCAGAGTTCCGGTAGCAAGATTGGCTGCAGCCCAAGTTGCTGTTTAA 2889 45.03 MSSLMHGSLLQTIADCDQGLLRRGKYHLGHTNLLKEKHSSLRANRGGKGKGICCQDLHISSPKPERHEPSNRHGSRADAVLSPVIPTTKKRVFTFGKGRSEGNKSMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQENGNRLPDGLWEEILEGLESIEKDMGAVLGDPLKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLADKSGERFAYDSYRRFLDMFGNVVMDISHSLFEEKLEHLKIAKGIELDTDLTASDLKELVEQYKEVYVEAMGETFPSDPKQQLQLAVKAVFNSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGSTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLDTMKDHMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVDEGLVDTRTAIKMVEPQHLDQLLHPQFEDPSAYKDQVVATGLPASPGAAVGQVVFSADDAEAWHAQGKSVILVRAETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDSAKVLVIGDLVINEGDWISLNGSTGEVILGKQPLSPPALSGDLEIFMSWADQIRRLKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIRAVRKMIMAVTVEQRKSALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEEIVKGLTAETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSSQGIKVLPEIMVPLVGTPQELKHQVSSIRRVAEKVFSEMGSSISYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYISQGILQNDPFEVLDQKGVGQLIKLATEKGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPVARLAAAQVAV* 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10441908 10450058 + CsaV3_3G013930.1 Csa03g01393 522298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01393 962 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 539 550 IPR018274 GO:0016310|GO:0016772
Csa03g01393 962 Gene3D Phosphohistidine domain 472 598 - -
Csa03g01393 962 PIRSF PPDK 88 962 IPR010121 GO:0006090|GO:0050242
Csa03g01393 962 TIGRFAM pyru_phos_dikin: pyruvate, phosphate dikinase 89 962 IPR010121 GO:0006090|GO:0050242
Csa03g01393 962 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 91 468 - -
Csa03g01393 962 Pfam PEP-utilising enzyme, mobile domain 511 592 IPR008279 GO:0016310|GO:0016772
Csa03g01393 962 ProSitePatterns PEP-utilizing enzymes signature 2. 852 870 IPR023151 GO:0016772
Csa03g01393 962 MobiDBLite consensus disorder prediction 60 74 - -
Csa03g01393 962 Gene3D - 201 285 - -
Csa03g01393 962 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 391 445 IPR002192 GO:0005524|GO:0016301|GO:0016310
Csa03g01393 962 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 154 381 IPR002192 GO:0005524|GO:0016301|GO:0016310
Csa03g01393 962 Gene3D - 92 332 IPR013815 GO:0005524
Csa03g01393 962 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 90 961 IPR010121 GO:0006090|GO:0050242
Csa03g01393 962 Gene3D - 622 962 IPR040442 -
Csa03g01393 962 PANTHER PYRUVATE, PHOSPHATE DIKINASE 90 961 - -
Csa03g01393 962 Gene3D Pyruvate Phosphate Dikinase, domain 2 431 619 - -
Csa03g01393 962 Pfam PEP-utilising enzyme, PEP-binding domain 606 961 IPR000121 GO:0016310|GO:0016772
Csa03g01393 962 SUPERFAMILY Phosphohistidine domain 476 600 IPR036637 GO:0016310|GO:0016772
Csa03g01393 962 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 608 961 IPR015813 GO:0003824
Csa03g01393 962 MobiDBLite consensus disorder prediction 58 77 - -
Csa03g01393 962 Gene3D - 333 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01393 K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] - csv:101214608 1879.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01393 Csa_Chr03 FPKM 24.465654 24.810549 38.201542 38.876495 9.752528 12.940778 10.423197 76.239517 77.140923 75.483696