Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01396 ATGTTGAGGATCCTGAGGAGTGAACTTCGACGTCTCTGCTCAAGGTTATGGTGGCTGATATGGAAGCACCCGAAGCGGAGGGTTATTGTCAAAAGGTTTGGGAAGATGAATGTGAAAGGTCGACAAAAAGGCAGACCAGATAAAAATAAAGCCAGAGTTTATACGAAGAACCAGTTGTGTGATTCCGTCATCACAAGGCCATTTCGTGTTGCTACATTCAATGTTGCCATGTTCTCTCTTGCGCCGGCTGTCCCAGTTGCTGAGAAACCAGCAACATTCGGGTTTGGTAGAAAGGAATACAGTTTTAGAAGCCCTGTGAATCATTGCCCAAAGAGCATACTAAAGCAATCTCCACTGCATACTGCATTAAGCAAGACTGAATCTCTCTCCAGGTCAAAGCCAAAAGTTTCCATTAATCTTCCTGACAATGAGATTTCATTAGCAAACAACAAGTTATCTGCTTCCATGGAAAACGGAACACCGGGCTTAACGAAGACAACTGACAAAAGGTACTTTAAAAGCCAAGTCCCAGTAAGGTCTCCTGTGTGTTTTCCTTTCTCCATAGCTAATTGGCACTGTGAAGACGACTTGACAAGTAGTAGAACCATCCTAGAGGTTCTCAAAGAGGCAGATGCTGATATATTGGCTTTACAAGATGTGAAGGCTGAGGAATCAAAAGGTATGAAGCCTCTATCTGATTTAGCAGCTGCTTTAGGAATGGATTATGTGTTTGCTGAGAGCTGGGCTCCTGAGTATGGAAATGCTGTTTTGTCCAAATGGCCAATCAAAAGGTGGAAAGTTCAGAAGATTGCCGATGATGATGATTTCAGAAACTTGCTGAAAGTTGCAATTGACGTACCGGGGACAGGTGAAGTTAACATCTACTGCACTCAACTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATTAATGCAATAACTAAATCAGTTGATTGTCCGCACATCTTGGTGGGTGGTCTCAATTCTTTGGAGAAATCTGATTACTCACCCGAAAGATGGACCAACATAGTCGAGTACTACGAGAAGGTTGGAAAGCCGACTCCAAAGGTGGAGGTGATGAAGTTTTTGAGTGGAAAAGGGTACATAGATTCAAAAGACTACGCAGGAGATTGTGAGCCAGTGGTCATCATGGCCAAAGGCCAAAATGTACAGGGAACCTGCAAATATGGCACGAGAGTCGACTATATCTTAGCTTCACAGGATTCAACGTTTAAATTTGTACCGGGTTCATACTCAGTCGTCTCATCGAAAGGTACATCTGATCACCACATTGTGAAGGCAGAGTTTGTAGGAATAGGGCAGAAAGCAAGCAGAGGGCATAAGGATTTAAAGAAAAGGATTTCAAGGTTGACTCAAACATGTTCATCCATAGGGATGTCATTGATGCATACTTAG 1419 42.99 MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLCDSVITRPFRVATFNVAMFSLAPAVPVAEKPATFGFGRKEYSFRSPVNHCPKSILKQSPLHTALSKTESLSRSKPKVSINLPDNEISLANNKLSASMENGTPGLTKTTDKRYFKSQVPVRSPVCFPFSIANWHCEDDLTSSRTILEVLKEADADILALQDVKAEESKGMKPLSDLAAALGMDYVFAESWAPEYGNAVLSKWPIKRWKVQKIADDDDFRNLLKVAIDVPGTGEVNIYCTQLDHLDENWRMKQINAITKSVDCPHILVGGLNSLEKSDYSPERWTNIVEYYEKVGKPTPKVEVMKFLSGKGYIDSKDYAGDCEPVVIMAKGQNVQGTCKYGTRVDYILASQDSTFKFVPGSYSVVSSKGTSDHHIVKAEFVGIGQKASRGHKDLKKRISRLTQTCSSIGMSLMHT* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10453578 10455343 + CsaV3_3G013960.1 Csa03g01396 522301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01396 472 Gene3D Endonuclease/exonuclease/phosphatase 186 438 IPR036691 -
Csa03g01396 472 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 468 - -
Csa03g01396 472 SUPERFAMILY DNase I-like 191 437 IPR036691 -
Csa03g01396 472 Pfam Endonuclease/Exonuclease/phosphatase family 199 430 IPR005135 GO:0003824
Csa03g01396 472 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 1 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01396 - - - csv:101215085 942.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01396 Csa-Chr3:10453578 Csa06g02309 Csa-Chr6:20764544 3.72E-166 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g395 . . . . . . . . . . . Cma14g01657 . Car14g01491 Sed02g1295 . Cpe03g01401 Bhi01g00893 Tan10g0919 Cmetu06g0465 . Hepe05g1499 . Lcy11g1475 . . . . . . . . . Cone7ag0192 . Lsi05g01479 . . Cme06g00670 . Blo07g00197 . . . Bpe13g00636 . Bma06g01528 . . Cmo14g01702 . . . . . . . . . . . . . Cla05g00599 Cam05g0659 Cec05g0666 . Clacu05g0652 Cmu05g0621 Cre05g0690 . Csa03g01396 Chy06g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011959 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01396 Csa_Chr03 FPKM 6.463505 8.366733 5.426176 5.017725 2.715433 3.273655 3.948882 4.496783 4.686363 4.261807