Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01397 ATGGCCACCTCTAGTAAGCAAAAAACTCTCACCGGCGCCGGAGATCTGATCAGAATCCTCCCGACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCAATCCTCACCAACAGCGGCCATTGCAACTCCTTCAACAAATCCCTCTCTCTCATCTTCATCCTCTTTTGCGGCCTCTCCTGTTTCCTCTCCTCCTTCACCGACACCTACATCGGCCACGACGGTGCCATCCATTTAGCCTTTGCTACCCCATCCGGACTCTGGCCAGCCCCGGCTCCGGCCTCCGTCGACATGGCCAACTATAAACTCCAGCTGGGAGACTTCGTCCACGCTACCCTATCGGTAGCTGTGTTTTCAGTCCTAGTCGTGTTAGACTCCGACACGGTGCGGTGCTTCTTCCCAAGCCTGGTGGCGGAGGATAAATTGTTGGTCCAGGTTCTACCGCCAGTGGTCGGAGCGGTTTCGAGCGCGGTGTTTGTTATGTTCCCTAATACTCGCCATGGGTTTGGTTCCTTACAAATGGCAACCTCCCAGCTTAACCAAAAAACCTTCACCGGAGCCGGTGACCTTATCAAAATCCTCCCCACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCCGTCCTCACCAACAGCGGCCACTGCGAGCCCATCAACAAAGTTTTCGTCCTTGTTTTCGTCATCCTTTGCGGTCTCTCTTGTTACCTCTCCTCCTTCACCGACTCCTACGTCGCCTCTGACGGTACCATTCAATGGACCATCGTGACGCCGTCTGGCATGTGGCCAACACCGCCAACGTCAGAGTCGTTGGACTTATCGGCATACAAGCTTCGGCTAGGGGATTTCATCCATGCGACATTTTCCGCAGCAGTGTTTGCTGTTTTGGTGGTGATGGACTACAATATAGTGTTGTGCTTCTTCCCCAGCTTGGTAGAGCAACATAAGGTATTCGTCCAAGCTCTGCCGCCGGTGGTTGGAGTGGTTTCGAGCGTTGTGTTCGTCATGTTTCCTAATACTCGCCATGGCATAGGGTACCGTTCTACTTCTTCAACAACCACAATATCAGTTTCGAAAGCAACTTCTACTGCTTGA 1089 53.26 MATSSKQKTLTGAGDLIRILPTGTVFLFQFLSPILTNSGHCNSFNKSLSLIFILFCGLSCFLSSFTDTYIGHDGAIHLAFATPSGLWPAPAPASVDMANYKLQLGDFVHATLSVAVFSVLVVLDSDTVRCFFPSLVAEDKLLVQVLPPVVGAVSSAVFVMFPNTRHGFGSLQMATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINKVFVLVFVILCGLSCYLSSFTDSYVASDGTIQWTIVTPSGMWPTPPTSESLDLSAYKLRLGDFIHATFSAAVFAVLVVMDYNIVLCFFPSLVEQHKVFVQALPPVVGVVSSVVFVMFPNTRHGIGYRSTSSTTTISVSKATSTA* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10457950 10460390 + CsaV3_3G013970.1 Csa03g01397 522302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01397 362 PANTHER PROTEIN DMP3 3 172 IPR007770 -
Csa03g01397 362 PANTHER PROTEIN DMP3 175 357 IPR007770 -
Csa03g01397 362 Pfam Protein of unknown function (DUF679) 13 169 IPR007770 -
Csa03g01397 362 Pfam Protein of unknown function (DUF679) 186 344 IPR007770 -
Csa03g01397 362 PANTHER PROTEIN DMP2 3 172 - -
Csa03g01397 362 PANTHER PROTEIN DMP2 175 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01397 - - - csv:101205404 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01397 Csa-Chr3:10457950 Csa06g03656 Csa-Chr6:29403344 3.19E-38 dispersed
Csa03g01397 Csa-Chr3:10457950 Csa03g01398 Csa-Chr3:10464144 9.63E-84 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g394 . . . . . . . . . . Cma06g01450 Cma14g01656 Car06g01251 Car14g01490 . Cpe08g00226 Cpe03g01400 . . . . . . . . . . . . . . . . Cone7ag0191 Cone4ag0185 Lsi05g01481 . . Cme06g00671 . . . . . Bpe13g00637 . Bma06g01527 . Cmo06g01450 Cmo14g01701 . . . . . . . . . . . . . Cla05g00600 Cam05g0660 Cec05g0668 Cco05g0664 Clacu05g0654 Cmu05g0623 Cre05g0692 . Csa03g01397 Chy06g00640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002299 0 3 0 1 1 2 2 3 3 2 2 3 2 3 3 2 3 2 2 3 2 1 1 3 1 4 2 3 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01397 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0