Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01399 ATGCAAGGCAAAGAATCTGGCACTTCCGGCTCCTTTCTTCCTGACGGAGTCCTGCAAGTTCTGCCTTCTGATCCTTTTGAACAGCTCGATGTGGCTCGCAAAATCACTTCCATTGCTCTTTCTACTCGCGTGTCCTTGCTTGAATCGGAATCCTCTGTTCTTCGTTCTAAACTTGCTGAGAAAAATGAGATCGTTGCTGACCTTCGGTTCCAGATCGAATCACTCAACGCTTCGCTCTCCGAGACTTCTGACAAACTCGCTCAGGCAGATGAGGAGAAGGAGAGTTTGGAGAGAGAGAATGCCTCGTTGTCGTACACTGTGAAGAAGCTCAGTAGAGATGTTGCGAAGTTGGAGGTTTTCAGAAAGACGTTAATGCTATCACTTCAGGAGGAGGGAGATAGCGCTACAGAAACTCCAGAAGTTGTTGCTAGGATACAGAGCCAACCAAGTGAATCTACTTTTTCACAAATTGAAGAAGAGGTTTCATCCTTCCCACCCTCTAGATATTCATCCGTTCAGAGCGTTTCCGAAGTAGGAAGTTCGTTAGCAGAGGATCATGATTCAGATAGCATACGACCTCGTATTGCGCCTGGCCTCCTGTTAGCGTCCCAGTCGAGTACACCTCGACTTACTCCCCATGGTTCTCCTCCTTCACTATCAGCGTCAGGATCCCCAAAGAGAACATCTAGATCTGTATCACCTGGGCGACATTCAATGTCTCTCTCAACCTCCAGGAACATTTTTGGAGATAGGTCTTCAGTATATTCTTCTGCGCCCTCGAGCCATTATGGCTCCATTTCCTCTAGCACAGGGAGAACTCGGGTCGATGGAAAGGAGTTTTTCCGACAAGTCAGGAGCCGTTTGGCTTATGAACAGTTTGCTGCATTTTTAGCAAATGTAAAGGATCTAAATTCTCACAGGCAAACAAAAGAGGAGACTCTTCATAAGGCAGAGGAGATATTTGGAGACGAGAATAAGGATCTTTATGCCATTTTTGAGGGATTGATTAATCGCAATCTCTAG 1023 46.24 MQGKESGTSGSFLPDGVLQVLPSDPFEQLDVARKITSIALSTRVSLLESESSVLRSKLAEKNEIVADLRFQIESLNASLSETSDKLAQADEEKESLERENASLSYTVKKLSRDVAKLEVFRKTLMLSLQEEGDSATETPEVVARIQSQPSESTFSQIEEEVSSFPPSRYSSVQSVSEVGSSLAEDHDSDSIRPRIAPGLLLASQSSTPRLTPHGSPPSLSASGSPKRTSRSVSPGRHSMSLSTSRNIFGDRSSVYSSAPSSHYGSISSSTGRTRVDGKEFFRQVRSRLAYEQFAAFLANVKDLNSHRQTKEETLHKAEEIFGDENKDLYAIFEGLINRNL* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10466785 10470155 + CsaV3_3G013990.1 Csa03g01399 522304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01399 340 PANTHER BNAC01G41860D PROTEIN 12 339 - -
Csa03g01399 340 MobiDBLite consensus disorder prediction 204 244 - -
Csa03g01399 340 MobiDBLite consensus disorder prediction 147 192 - -
Csa03g01399 340 MobiDBLite consensus disorder prediction 147 181 - -
Csa03g01399 340 PANTHER - 12 339 - -
Csa03g01399 340 Coils Coil 72 113 - -
Csa03g01399 340 Coils Coil 300 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01399 - - - csv:101215330 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01399 Csa-Chr3:10466785 Csa06g01166 Csa-Chr6:9784109 6.86E-68 dispersed
Csa03g01399 Csa-Chr3:10466785 Csa06g00556 Csa-Chr6:4769005 1.53E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g391 . . . . . . . . Cmo08g01161 Cmo17g00278 . . Car06g01252 . . Cpe08g00225 . . . . . . . . Cla06g00525 Cam06g0564 Cec06g0564 Cco06g0571 Clacu06g0552 Cmu06g0548 Cre06g1317 Cone14ag0802 Cone15ag0802 . . Lsi05g01484 . Chy11g01450 Cme06g00674 . . . . Bpe05g00758 . . . . Cmo06g01451 . Cma08g01189 Cma17g00289 Car08g01065 Car17g00265 Cpe12g00241 Cpe17g00109 Bhi12g01766 . . . . . . . . . . . . . Lsi09g01379 Csa03g01399 Chy06g00642 Cme11g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002295 1 3 1 0 1 2 3 2 2 2 1 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 7 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01399 Csa_Chr03 FPKM 7.776817 9.718361 0.079755 0.0 0.0 0.0 0.0 0.363448 0.0 0.0