Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01400 ATGACGGTTAACAGCTTGAAGAAGAGATGGAAATCTGAAAATTTTATTGCAATTTTCTTCTTCTTCTTCTTCATTTCTTCTCTTTCTCTAGTGATCCCATTCAGTTCCATGGCGGAATTACTCTGTTTCAATCTACTCTTTCTCTTCACATTATCCATCTCCTTCCTTCTCCAGCGAGCTTCAGCCTCCTATGCAGGTTCCGCTAGCTCAATCGTCAACCCTGCAAAAGTCAAACAGATTTCATGGTCTCCTCGGGCTTTTGTGTATGAAGGTTTTCTCACGGATTTAGAATGCGATCATCTCATTTCCCTCGCTAAAGCGGAGCTGAAGAGATCTTCTGTTGCGGATAATTTGTCCGGAAAGAGCAAAGTCAGCGAGGTTCGAACTAGCTCTGGGGCGTTTATTCATAAAGCCAAGGATCCTATTGTTTCTGGTATAGAAGACAAAATTGCAGCATGGACATTTCTGCCAAAAGATAATGGCGAAGACATTCAAGTGTTGAGATATGAATATGGACAGAAGTACGATGCACACTTTGATTACTTTGCTGACAAGGTTAACATTGCTCGAGGTGGACATCGAATGGCAACCGTTCTCATGTATCTTTCTGATGTAGAAAAAGGCGGTGAAACTGTGTTTCCTTCTGCGGAGGAATCTCAAAGACGCCAGGCTTCCGAAACAAACGAAGATCTTTCAGATTGTGCAAAGAAAGGCATAGCAGTAAAACCCCGGAAAGGCGACGCTCTTCTCTTCTTCAGCCTCCATCCAAATGCTATTCCAGACACAAGTAGTCTACATGGTGGGTGCCCTGTGATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCGTGTCGATTCCTTCGACATGGTCGTGAGAGACCATACAAATTGCGGTGATGAAAATCCAAGTTGTGAGAGATGGGCTGAACTCGGCGAGTGCACGAATAACCCGGAGTATATGGTGGGATCTCCTGAGCTTCCTGGCTACTGCCGGAAAAGTTGTAAGGCATGTTCATAA 1020 44.22 MTVNSLKKRWKSENFIAIFFFFFFISSLSLVIPFSSMAELLCFNLLFLFTLSISFLLQRASASYAGSASSIVNPAKVKQISWSPRAFVYEGFLTDLECDHLISLAKAELKRSSVADNLSGKSKVSEVRTSSGAFIHKAKDPIVSGIEDKIAAWTFLPKDNGEDIQVLRYEYGQKYDAHFDYFADKVNIARGGHRMATVLMYLSDVEKGGETVFPSAEESQRRQASETNEDLSDCAKKGIAVKPRKGDALLFFSLHPNAIPDTSSLHGGCPVIEGEKWSATKWIRVDSFDMVVRDHTNCGDENPSCERWAELGECTNNPEYMVGSPELPGYCRKSCKACS* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10471230 10474681 + CsaV3_3G014000.1 Csa03g01400 522305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01400 339 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 40 338 IPR045054 -
Csa03g01400 339 ProSiteProfiles ShKT domain profile. 298 338 IPR003582 -
Csa03g01400 339 Gene3D q2cbj1_9rhob like domain 76 285 - -
Csa03g01400 339 SMART ShkT_1 297 339 IPR003582 -
Csa03g01400 339 Pfam 2OG-Fe(II) oxygenase superfamily 164 284 IPR044862 -
Csa03g01400 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 285 IPR005123 -
Csa03g01400 339 SMART p4hc 84 284 IPR006620 GO:0005506|GO:0016705|GO:0031418
Csa03g01400 339 Pfam ShK domain-like 297 338 IPR003582 -
Csa03g01400 339 PANTHER PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-LIKE PROTEIN 40 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01400 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - csv:101215570 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01400 Csa-Chr3:10471230 Csa05g02957 Csa-Chr5:29889615 3.42E-114 dispersed
Csa04g00380 Csa-Chr4:2324209 Csa03g01400 Csa-Chr3:10471230 1.04E-59 transposed
Csa05g00472 Csa-Chr5:3070078 Csa03g01400 Csa-Chr3:10471230 6.63E-62 transposed
Csa06g03000 Csa-Chr6:25877074 Csa03g01400 Csa-Chr3:10471230 1.18E-50 transposed
Csa06g03366 Csa-Chr6:28030486 Csa03g01400 Csa-Chr3:10471230 1.24E-84 transposed
Csa03g01400 Csa-Chr3:10471230 Csa06g00558 Csa-Chr6:4782599 4.67E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g389 . . . . . Bpe14g01160 . . Cmo08g01163 Cmo17g00279 Cma06g01451 Cma14g01654 Car06g01253 . . Cpe08g00224 Cpe03g01399 Bhi01g00918 . . . . . . Cla06g00523 Cam06g0562 Cec06g0562 Cco06g0569 Clacu06g0550 Cmu06g0546 Cre06g1315 Cone14ag0801 Cone15ag0800 . . Lsi05g01486 . Chy11g01452 Cme06g00675 Blo02g00567 Blo07g00195 Bda11g00550 . . Bpe13g00639 . . . Cmo06g01452 Cmo14g01700 Cma08g01191 Cma17g00291 Car08g01068 Car17g00267 Cpe12g00243 Cpe17g00107 Bhi12g01764 . . . . . . . . . . . . . . Csa03g01400 Chy06g00643 Cme11g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01400 Csa_Chr03 FPKM 28.077921 30.66078 29.261286 30.181833 33.921402 30.776352 33.089211 29.200077 31.524324 27.773172