Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01402 ATGAAAGCAGAGGAAATGTTACTGCACAAGAATTTCTGGGTTATTTTAGTGTTTATTGGAGTGGCTTTTGGAGCCAATTTGATGGTTGTTAAGGGATTGCCACGACGAATTCTCTTGGATACTGATGTTGATACTGATGATTTATCTGCTCTTTTGTACCTCTTGAAGCTTAATCGTTCAGAATTTGAGTTGGAGGCAGTCACTATTAGTACAAATGCTTGGACAAGTGCTGGACATGCAGTGAACCAAATTTATGACATTCTTTACATGATGGACCGCGATGATGTTGCTGTTGGAGTTGGAGGAGAAGGTGGGATACTCGAGGATGGAACAATTCAACCCAACGTTGGTGGATATCTCTCCATAATTGAGCAGGGATTGACGACTACAGGTGGATGTAGATATAGACAAGCCATTCCAGTTGGTGTTGGAGGGCGACTAGATGCTGATACCAACTATGGGCTTCGCAAAGCATTCCTCCCGCAGGGAAGCAGGAGGTATAATCCTTTGCAACAATCAACTGCTCAGCAGGTGATGATAGATAAAATATCTGAAGGCCCCATTAATATATTCTTAATAGGATCACACACAAATTTTGCCATTTTCCTCATGAGTAATCCACACCTGAAGAAGAATGTTGAGCATATTTATATAATGGGTGGTGGTATAAGATCAGAGAACCCAACTGGCTGCTGTACACAAAATGCCAGCCAATCTTGCACTCCTCGACAATGTGGTGATCCTGGTAACTTATTCACAGATTACACTAGCAATCCTTATGCAGAGTTCAATATATTCGGAGATCCTTTTGCAGCATATCAGGTGATTCATTCTGGAATTCCAGTCACCATTATCCCACTGGATGCAACAGACACCATTCCAGTGACTAAGAATTTCTTTGAAGTATTTGAGCAGAATCACGATACAGTTGAGGCACAATATATATTCCAATCCTTGAAAATAGCTCGTGATTATCGGCTTGGCGAGCTATTTTATACGAACTATTTCATGTGGGATTCTTTCGCATCTGGTGTGGCAACATCTATCATGCTTAACTCGCATATCGATGATGGCCAAAATGATTTTGCTCTCATGGAGTACATGAATATAACTGTAGTTACTTCAAATAAACCTTATGGTATATCTGATGGGTCAAATCCATTCTTTTATGGACGTCAAATTCCAAAATTTGGTCTTCAAAAAGGTGGGGTGCACAGTGGCCATGCTCAAACAGGACTTCGAGATCCCTTTTGCATTGTGAATAATGGAAAAGGGAAATGTCAGGATGGTTATACCGCAGAAGTAATGGGTCCAGAGGGAGTGCGCACTTTGGTTGCTACAAGAGCAAAGCCCAACCGGAACATCACCAGTCCTCTTGACAGAGAATTTTACCTAGGCTTTTTAGATGTTATTAACAGTCCTATAAACACAGGAAGATTCAATTTTACCACACAATTCCCAGATTACGAGCAAGTTATGTACATACCAGATTTCAGAAATATAAGACTGGGGAAACCTGTTGTGATTGATATGGATATGAGTGCTGGAGATTTTCTAGCTTTGTTCTATCTTTTGAAAGTACCTGTGGAAGTTATTGACATTAAGGCAATAATAGCCAGTCCAACAGGATGGGCAAATGCTGCAACAATAGACGTTATCTATGACCTACTACATATGATGGGTCGAGATGACATACCAGTAGGTCTTGGAGACGTTTTTGCAGTAAACCAATCAGATTCAGTTTTGCCTATTGTTGGGGACTGTAAATATGCTAAAGCCATTCCAAATGGATGTGGTGGATATTTGGACTCCGACACTCTCTATGGTCTTGCTCGAAATTTGCCCAGAAGCCCAAGAAGGTACACAGCAGAAGGCCCAGTAAAACATGAAGCTCCTCAGAACTCTCAGCAACCTGAACTGAGACAACCTCTAGCCATGGAAATTTGGGAATCCATATTGACAACATTGGAACCAGGATCCAAGATTTCAGTGCTTACCAATGGACCATTGACTAATTTAGCAAAGCTTATTACATCAAACAAAAACGCAAGCTCCCTTATTCAGGAAGTTTATATAGTTGGGGGACACATCAAGGATGATGATACGGACAAAGGGAATGTTTTCACCGTTCCTTCAAATATATATGCAGAATTCAATATTTTTCTTGACCCCTTGGGTGCAAGGACTGTGTTTGAGTCGACAGTTAATGTCACACTAGTTCCCCTTGGCATCCAGCGACGTGTGAGCTCATTTGAAAACATATTAGAAACTCTCCACAAGAAAAAGAAGACACCTGAGCTTCTCTTTGCCAATCGTTTGCTGTCAAGACTCTTTCGTTTGAAGCAATCAGACATCTGTTATGAGCATGTGGATACTTTCCTGGGTGAAATTCTTGGCGCTGTAGTTTTGGCTGAAGAAGATCTTGTCAAACCAGTTTTTCAATTCAAGCATGTAAAGATCTTGGCAGATGGTGTTGAATCTCAAGATGGCCAAACAGTCATATATGAGAAGGGTGGGAAATTGATCCAAGTACTACAGAATTTGAACCAAACAGCCTACTTTGATCTATTTGCAAACCGGCTAAGCGACACAAAACAATCTGCAGTGATCAAAAGCTTTAACGACCAAAAAAGAATTTGGTATAAATTGAAAAACCTCACCTGTAATTATTGTCATGGTTCGTGTGTTAATTGA 2694 40.65 MKAEEMLLHKNFWVILVFIGVAFGANLMVVKGLPRRILLDTDVDTDDLSALLYLLKLNRSEFELEAVTISTNAWTSAGHAVNQIYDILYMMDRDDVAVGVGGEGGILEDGTIQPNVGGYLSIIEQGLTTTGGCRYRQAIPVGVGGRLDADTNYGLRKAFLPQGSRRYNPLQQSTAQQVMIDKISEGPINIFLIGSHTNFAIFLMSNPHLKKNVEHIYIMGGGIRSENPTGCCTQNASQSCTPRQCGDPGNLFTDYTSNPYAEFNIFGDPFAAYQVIHSGIPVTIIPLDATDTIPVTKNFFEVFEQNHDTVEAQYIFQSLKIARDYRLGELFYTNYFMWDSFASGVATSIMLNSHIDDGQNDFALMEYMNITVVTSNKPYGISDGSNPFFYGRQIPKFGLQKGGVHSGHAQTGLRDPFCIVNNGKGKCQDGYTAEVMGPEGVRTLVATRAKPNRNITSPLDREFYLGFLDVINSPINTGRFNFTTQFPDYEQVMYIPDFRNIRLGKPVVIDMDMSAGDFLALFYLLKVPVEVIDIKAIIASPTGWANAATIDVIYDLLHMMGRDDIPVGLGDVFAVNQSDSVLPIVGDCKYAKAIPNGCGGYLDSDTLYGLARNLPRSPRRYTAEGPVKHEAPQNSQQPELRQPLAMEIWESILTTLEPGSKISVLTNGPLTNLAKLITSNKNASSLIQEVYIVGGHIKDDDTDKGNVFTVPSNIYAEFNIFLDPLGARTVFESTVNVTLVPLGIQRRVSSFENILETLHKKKKTPELLFANRLLSRLFRLKQSDICYEHVDTFLGEILGAVVLAEEDLVKPVFQFKHVKILADGVESQDGQTVIYEKGGKLIQVLQNLNQTAYFDLFANRLSDTKQSAVIKSFNDQKRIWYKLKNLTCNYCHGSCVN* 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10480062 10486989 - CsaV3_3G014020.1 Csa03g01402 522307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01402 897 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTEIN 14 883 - -
Csa03g01402 897 SUPERFAMILY Nucleoside hydrolase 34 380 IPR036452 GO:0016799
Csa03g01402 897 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE 14 883 - -
Csa03g01402 897 SUPERFAMILY Nucleoside hydrolase 505 861 IPR036452 GO:0016799
Csa03g01402 897 Pfam Inosine-uridine preferring nucleoside hydrolase 37 348 IPR001910 GO:0016799
Csa03g01402 897 Pfam Inosine-uridine preferring nucleoside hydrolase 507 854 IPR001910 GO:0016799
Csa03g01402 897 Gene3D - 505 863 IPR036452 GO:0016799
Csa03g01402 897 Gene3D - 28 382 IPR036452 GO:0016799
Csa03g01402 897 MobiDBLite consensus disorder prediction 619 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01402 - - - csv:101216049 1769.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02819 Csa-Chr1:24793329 Csa03g01402 Csa-Chr3:10480062 9.54E-19 dispersed
Csa03g01402 Csa-Chr3:10480062 Csa06g02674 Csa-Chr6:23507778 2.42E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g387 . . . . . . . . . . . Cma14g01653 . Car14g01487 . . Cpe03g01397 . . . . . . . . . . . . . . . . Cone7ag0188 . Lsi05g01487 . . Cme06g00677 . Blo07g00194 . . . Bpe13g00641 . Bma06g01525 . . Cmo14g01697 . . . . . . . . . . . . . Cla05g00603 Cam05g0664 Cec05g0673 Cco05g0668 Clacu05g0658 Cmu05g0627 Cre05g0696 . Csa03g01402 Chy06g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001428 0 17 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 3 2 2 2 2 3 3 3 2 2 2 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01402 Csa_Chr03 FPKM 0.0 0.0 0.0 1.217306 0.0 0.37709 0.0 1.140317 0.33073 0.34845