Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01404 ATGGAAAATCCCCCTCCCTCGCCGCTCTCTCATCCCTTACCCGACGTCGAAATGGACATTCAACTTCCCATGGCCGACGACTCCTCCACATCTCTCTGGGACTTGGGGGATCTCCTCGACTTCGCTGCAGATGATCAGTTTTCCTTCTCTTTGGAACAGGACAATTTGCCTTCTGCCTCCTCTCATTACCTCGAGATTCAATCCCAAACTCCACCTTCGAATTCCGACCGGATTCGGAAGCGCGACCCGAGGTTGACCTGCTCCAACTTCTTGGCTGGGCGAGTTCCTTGTGCTTGCCCTGAGGTTGATGCGATGCTTGAGGCAGAAGTCGCTGCAGCGCCTGGGAAGAAGCGGGCTAGGACGGCGCGAGTTGGTGCTGGCTCTGTTCGGTGTCAAGTACCGGGGTGTGAGGTTGATATTAGTGAGCTTAAAGGTTATCATAGAAGGCATAGAGTTTGTCTTCGTTGCGCTAACGCTACTGCTGTTGTGATAGATGATGAGACTAAACGATATTGTCAGCAGTGTGGCAAGTTTCATGTTTTATCTGATTTTGATGAAGGCAAACGGAGTTGTCGAAGAAAATTAGAGCGGCACAACAATCGTCGGCGTAGGAAGCCCGTTGATTCCACACCTTCTATGGAAAGTGATCGATCAAGCATGCAGCTAGAGGATGTTTCTTGCGATGGCGATGTAGGGAAAGATAATATTCTTTTCAACAACCAAACTGATCAAAAGGAGGTAGTGCATTTGGAGTCTGACGATGGGCTGGTTACCTCCACCGTATGTTCAGCTCCCGATCAGCAAAATAATGTAGAAAGCGGGTTAACTTTAGTGGGAACTGGTGAAGCTCAAGTGGATGGAGGAAAAGATAATTCCAAATCTCTTGCTTCGTCCTATTGTGACAACAAAAGCACATATTCATCAATGTGTCCAACTGGGCGAATATCATTCAAGCTTTATGACTGGAATCCTGCAGAGTTCCCTAGAAGACTTCGGCTCCAAATATTTGAATGGTTGGCTAATATGCCTGTTGAGTTGGAGGGATATATTCGGCCTGGTTGTATAATTTTGACTGCATTTGTTGCAATGCCGAAGTTCATGTGGATAAAGTTACTTGAAGATCCCACGACACACGTGCATAATTTTGTAGTTGCACGTGGAAGACCTCTTTGGGGGAGGGGCAACATACTTGTTTACTTGAACAACATGATTTTTCACGCTATGGAAGGGGAAAGTGTAATGAAAATTGAGATGGATATGCAGGCTCCAAAACTTCACTATGTACATCCTACTTGCTTCGAGGCTGGAAAACCCATGGAGTTTGTTGCTTGTGGAAGTCATTTACGACAACCAAAATTTAGGTCTCTTGTGTCTTTTGGTGGAAAGTATCTTGACCACGACCAGTCTTTTGTTCTTCCTCATTGTCAAAAAGAAGGTAATGCTACTTGGAGTGACCACCAGTTGTTCAAGATATGTATACCCCATACAGAAAACGATATTTTTGGCCCCGCATTTGTTGAGGTTGAGAATCAGTCAGGCCTGTCAAATTTTATTCCCATACTCATTGGAGATAGTGAAACTTGTTCTGAAATGAAAGCTATTCAGGAGCGGCTTGATATGTCTCTGCTTGTGGAAGCTACTGGTTCTTCACATGATACTTGTGAACATTCTTCATTGAGACAAAAAGTATATTCAGAACTCATGATGGACATATCTTGGTTGCTCAAAAAGCCTTCATCAGAGCCCATGCAGCAAATTATGAATTCGTCACAAATTCAAAGATTCACACGTTTGTTAAAATTTTTGATATGCAATGACTCAACTGTCATTTTGGGGAGAGTCTTGGAACATCTTAAGATTGTCATGGAAAATGTGGAATCAAATGTGGGGGTTAATGGCTCCAATTATCCTGATTTAAGGTTTTTCGAGAAGTATTTAGATTACGCAGGAGATGTTCTTCAACTGAATCTTCGGAAAGCTGGCAATTCGGTGCTACACCTAGGATTTCTTAAGCCAAAAGGGGGTCATGTTTCTCAAAGCAGCTCCGAGAATAAATTGGTTTCAGTCGCTCCTGGGACTACACTGAAAATGGAGCCAAGAGAAAATGGTCATTTTCCAGCAGTGGCAGGTTCAATTTCCACTGGTAATGTGGAAACAATACCTCTTATAAACGAAAAGCTCAGCGAGAAAATCACAATTCAAGAACATTCAAGGAAGTCATGTGGTCTTCAATTCTCAGGTGTTCTTTTTAGACGTCAGACAACACTATTTGCAGTAACCTTTGTTGCTGTTTGTTTTGGAGTATGTGCAGCTTTAGTTCATTCTCACAAAGTTGGCGAGTTTGCAATTTCAATCCGCAGATGCTTGATAGATAAGTTGTAA 2382 43.41 MENPPPSPLSHPLPDVEMDIQLPMADDSSTSLWDLGDLLDFAADDQFSFSLEQDNLPSASSHYLEIQSQTPPSNSDRIRKRDPRLTCSNFLAGRVPCACPEVDAMLEAEVAAAPGKKRARTARVGAGSVRCQVPGCEVDISELKGYHRRHRVCLRCANATAVVIDDETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPVDSTPSMESDRSSMQLEDVSCDGDVGKDNILFNNQTDQKEVVHLESDDGLVTSTVCSAPDQQNNVESGLTLVGTGEAQVDGGKDNSKSLASSYCDNKSTYSSMCPTGRISFKLYDWNPAEFPRRLRLQIFEWLANMPVELEGYIRPGCIILTAFVAMPKFMWIKLLEDPTTHVHNFVVARGRPLWGRGNILVYLNNMIFHAMEGESVMKIEMDMQAPKLHYVHPTCFEAGKPMEFVACGSHLRQPKFRSLVSFGGKYLDHDQSFVLPHCQKEGNATWSDHQLFKICIPHTENDIFGPAFVEVENQSGLSNFIPILIGDSETCSEMKAIQERLDMSLLVEATGSSHDTCEHSSLRQKVYSELMMDISWLLKKPSSEPMQQIMNSSQIQRFTRLLKFLICNDSTVILGRVLEHLKIVMENVESNVGVNGSNYPDLRFFEKYLDYAGDVLQLNLRKAGNSVLHLGFLKPKGGHVSQSSSENKLVSVAPGTTLKMEPRENGHFPAVAGSISTGNVETIPLINEKLSEKITIQEHSRKSCGLQFSGVLFRRQTTLFAVTFVAVCFGVCAALVHSHKVGEFAISIRRCLIDKL* 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10499279 10508952 - CsaV3_3G014040.1 Csa03g01404 522309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01404 793 ProSiteProfiles Zinc finger SBP-type profile. 128 205 IPR004333 GO:0003677
Csa03g01404 793 Pfam SBP domain 131 205 IPR004333 GO:0003677
Csa03g01404 793 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 28 790 - -
Csa03g01404 793 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 790 IPR044817 GO:0003677
Csa03g01404 793 Gene3D - 122 192 IPR036893 GO:0003677|GO:0005634
Csa03g01404 793 MobiDBLite consensus disorder prediction 195 224 - -
Csa03g01404 793 SUPERFAMILY SBT domain 129 209 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01404 - - - csv:101205874 1561.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01404 Csa-Chr3:10499279 Csa03g02851 Csa-Chr3:27286153 3.50E-22 dispersed
Csa03g01404 Csa-Chr3:10499279 Csa01g00045 Csa-Chr1:262037 1.94E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g384 . . . . . Bpe14g01158 . . . . Cma06g01455 Cma14g01651 Car06g01257 Car14g01485 . Cpe08g00222 Cpe03g01395 . . . . . . . . . . . . . . . . Cone7ag0187 Cone4ag0183 Lsi05g01490 . . Cme06g00679 Blo02g00570 Blo07g00193 Bda11g00547 . . Bpe13g00642 . Bma06g01524 . Cmo06g01456 Cmo14g01695 . . . . . . Bhi12g02132 . . . . . Lcy13g0944 Cla05g00605 Cam05g0666 Cec05g0675 Cco05g0670 Clacu05g0660 Cmu05g0629 Cre05g0698 . Csa03g01404 Chy06g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004916 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31188 PF03110 SBP 2.90E-27 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01404 Csa_Chr03 FPKM 3.880023 4.008505 7.287224 6.63249 0.359465 0.192066 0.254374 4.864962 4.251947 4.790251