Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01408 ATGAATCAGTACCACATATATGAAGCCATTGGCCGTGGAAAGTATTCGACCGTGTATAAAGGGAGGAAGAAGAAGACGATTGAGTACTCCGCGATTAAAAGCGTGGATAAATCGCAGAAGAACAAGATTCTCCAAGAAGTCAGAATACTTCACTCCCTCGATCATCCAAACGTACTCAAGTTTTACTCATGGTATGAAACTTCTGCTCACTTATGGCTGGTGTTAGAGTACTGTGTTGGAGGAGATCTCATGAGCATCCTGCGCCAGGATGGGAAATTACCTGAAGATTCAATTCATGATCTTGCCAGTGATCTTGTCAGAGCATTGCAGTACTTGCACTCGAAAGGAATCATATACTGTGATTTGAAGCCATCAAATATCCTACTGGACGAAAATGGTCATATAAAGTTATGTGATTTCGAACTAGCTAGAAAGTTGAGTGAGATATCAAAAACAAATTCATCGGCTCCACAGACAAAACGAGGAACACCCTGTTATATGGCTCCTGAATTGTTCAAGGATGATGGTATCCACTCCTATGCGTCTGATATGTGGGCTCTTGGTTGTGTCCTATATGAATGCTTTGTGGGGAGGCCTCCTTTTATGGGAAGAGAGTTCACTCAACTAGTAAAATCTATCCTCTCAGATCCTACCCCTATCCTTCCTGGTAGCCCTAGTCGTCCTTTTGTCAACTTGATTAACTCATTGCTAGTAAAAGATCCAGCTGAAAGAATACAATGGCCTGAGCTTTGTGGTCATGCTTTCTGGCGAACTAAAATCACTCCTGTATCTTTACCTCCACAACCAGCTTTTGCAAATTTGATAAATCAACATTCCAAACCTTGTTTGTCGGAGAGGAATGGTGAGAAACTTGCTCCGAACAGGACTCCTCCTAAATGTAGAGAGAAAGATGCAAAGGGCACTTTAAGACAAAATGAAAATTCTGCTTTTGGCTCAAGTAAAAATGAAACACTTGTTAAAGGTACTCCAGGCAGTCAAAAAACTCAATCAAAGGTTTCTAGCAAGGTGGTTGAGGAGAAGAAATTGAAAGAAAATCCATCTGCTTCCAAGGGAGTAAATCTTTTAAGACTTTCAAGGATAGCAAAATCAAACTTGCAAAGAGAGAATGATAAAGAAAATTACAGAAGACCCGTTTCTGGCAACTCCGAAAATGATTCTGAGGTTGAACTTAAGAACACTGATATGGAGCTTGATTTTAATGAGAATGTTGAAGATGAGTCTCATGATGAACCTGACGAGTCTGATAATATAAATGGCAATCAAGAAGACAAGACATCGAATGATAATCATCAGGCGAGGATGGAGGAGGCTCAGAATATGGGAGGAGACCTTTCAGATTATTCACCTGCTGTTAATATCAATGCCTCAGATCTATCAAATAAACATGATCAGGAATCACCCTTGGTGCGTACAGAAGTAGTTGGTACTTCACCTAGTGCTAGCCCTCAACTTAAGAACCAAAGAACTAAAGAAGGTTCAACATATGCTCTTGATACCGATTCTTCGAAGTCATCCAATAACCTTTCAGAATTTTTTTGGCATCAATCTGATCTTTCGGTTAAACCAGTAATGCCGAGCAAAAAAGCTGATAAAATGTCAGATGTTAATCCTACCATTCTTCCTTTCGAGGGATTGCAAGCACCTGATTTTGTGAAGATGCCTAAGGAGTGGCAGGATGCCACGAGCAGTAAGATTATTGCTACTCTCAGTGGAAATACTAGTGTTGGTGAAAAGCAAAACATGATTAGATATCTTGAGATGCTTAGTAATAATGCTGATGCAGCCAATATTTTGACCAATGGGCCCGTAATGCTCATGCTTGTAAAAATGCTCAAGCAGTCCAAGGTGTTGCAATTGCGTGTTCAACTCACGTCACTAATTGGCTTGCTGATTCGCCACTCTACTTTTATTGACAATGACTTGGCAAATTCTGGTCTTTTATTTTCACTTACTGATGGACTCAGAGACAAACAAGAAAAAGTTAGGAGATTTTCTATGGCTGCTTTGGGAGAGTTGCTTTTTTATATTTCTACTCAGGAAGAGCATAATAGCAACGCCAATCCTCTGGAGTCTCCTTTGAAGGAGACTAGATCTCCCACTGGATGGCAGGTTCCAAATTCATTGATTTCTTTAGTCTCGTCAATTCTTCGAAAAGGAGAGGATGATTTAACTCAACTATATGCATTGAGGACCATTGAAAACATTTGTAGTCAAGGAGCAATTTGGGCATCTCGCTTTACCAGCCAAGATGTGATCAGCAACCTCTGCTACATATATAGAGCTTCTGGGAAATCGGAAAATATAAGGCTCACGGCAGGATCATGTTTGGTTCGCCTAGTCCGTTTTAATCCTTCATGCATTCAGTCAGTTACAGACAAATTATCGTCGAAGGACATGGCATGTGCCCTAGTTAAGGGCAATCCACGTGAGCAGCAAATCACCTTAAATCTTCTAAACATGATCATGGTTGGAGGTAATGTATTAACCAGCATTGGAAGGTACCTTCTACCTTTAATGGAGGAGAAGAATCTTGTCTCCAGTCTCATATCCCTTATTGAGCAGGGAAGTGAAGTTCTGAAGGGAAAGGCAATTGTTTTCGTGGCTTTCCTTTGTAAGAGTGTAAGACGGTGGTTGCCTCACTTCTTTTGCAATGCTAGGTTACTTTCGTCAGTGGACAGGCTCGCAAGGGAGAAGGACGTCTATGTCCAGCAGTGTTTGACTGGATCTCTGCATATTGTGGCATCTATCGTGCCTAGTTTGTTGGATATGATTATTGGAGATATTCAACAAATGATGGGAGGACGACGTCATGGGCATATCTCCTCCCCCCTTACCAGTCGTGCTGCTCCGAAGACCAACATTCACTTGTTTCCTGTTGTCCTTCATCTTCTTGGAAGTTCAACCTTTAAGCGCAAGGTTGTTAGTCCTCAGGTGCTGCAGCAATTGTCTGATCTAATCAGGCATATAGAAACACCATTTCAGGGCAGGGATGACTTCCAGATAACTTTACTTCGGGTTATTGAATCTATCACAGAGGAATTCTCGGTCATACTTGAAAACCCAGAGATTTTTGTCCATAAAATTCTCCCCAGTTTGGCTGTTCTTTACAAAGGTAACAAGGATGGGGATGCAAGATTCTTATGTCTAAAAATTCTGTTTGACGCGATGGTCATTTTCCTCAATGAACCGTCCTTAGATGGGCAAAGGTTGGAGGATCTAAAACAGATAGCAAATTTGCACTTCCTACCTCTCTATCCTGCCTTGATAGAAGATGATGATCCCATACCCATGTACGCTCAGAAACTTCTCGTGATGCTCATCGAGTGTAATTACATCAAAATTTCAGACATTCTGCATCTAAAGACAATCTCTCAATGCTTTGAGTTTTTGCTTGGCGACCTTTCAAATGCAAATGTAAGTAGTGTAAAGCTATGTTTAGCGCTGGCGTCTGCTCCAGAAATGGAATCAAGAATACTTTCTCAACTCAAAGTCGTTAGAAGAATAGGAATTTTGCTAGAGTTTGTGTATGCAAAGGATATGGAAGATTTTCTCGAACCAACACTTGGCCTTTGTAGAGCTCTCCTTCTGCGATCTGTTAGTTGTAGAAAGGGCTTCATCTACTCAAAAGAACCGTTTCTTCTGGGTGACGGTACTCCCGAGCAAAAAGTTCTTGTTAACCAGCTGGAATGCATTAGAGATATATCCGACTTTGGTAACAATCTTGGAGTTTTGTTGGAGTTAAGTGGCTCCTCAGAAGCAAATATTGCCGACATAGCCTCTGAATGTGTAGTGTTTTTGGTTACGGCGGCTCCTAGGGAAGGCACCACTGGTCTTCTTACAAATCTTCACAAAGTTAGTGTAATCCTGGAGTCCTGGCGGAGAGGTGGCTGCCTCTTACTTGTGCAGAGAATGCTGCATTCTCTCGGTTATGCTTGTCGACAGTACTTGGCCCATGCGATGATATTATCACTTTCCATATCGGAAATTTCACGGATTGAGGCTATTATATCTGATATCAAGAGTTCAAGCACGCCACGTTTAGCTAATGATGCAATGCTCGTGGCTATGGAGTTGCAAAGGCTTCATCGTTGTATTTGA 4119 41.47 MNQYHIYEAIGRGKYSTVYKGRKKKTIEYSAIKSVDKSQKNKILQEVRILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLMSILRQDGKLPEDSIHDLASDLVRALQYLHSKGIIYCDLKPSNILLDENGHIKLCDFELARKLSEISKTNSSAPQTKRGTPCYMAPELFKDDGIHSYASDMWALGCVLYECFVGRPPFMGREFTQLVKSILSDPTPILPGSPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKITPVSLPPQPAFANLINQHSKPCLSERNGEKLAPNRTPPKCREKDAKGTLRQNENSAFGSSKNETLVKGTPGSQKTQSKVSSKVVEEKKLKENPSASKGVNLLRLSRIAKSNLQRENDKENYRRPVSGNSENDSEVELKNTDMELDFNENVEDESHDEPDESDNINGNQEDKTSNDNHQARMEEAQNMGGDLSDYSPAVNINASDLSNKHDQESPLVRTEVVGTSPSASPQLKNQRTKEGSTYALDTDSSKSSNNLSEFFWHQSDLSVKPVMPSKKADKMSDVNPTILPFEGLQAPDFVKMPKEWQDATSSKIIATLSGNTSVGEKQNMIRYLEMLSNNADAANILTNGPVMLMLVKMLKQSKVLQLRVQLTSLIGLLIRHSTFIDNDLANSGLLFSLTDGLRDKQEKVRRFSMAALGELLFYISTQEEHNSNANPLESPLKETRSPTGWQVPNSLISLVSSILRKGEDDLTQLYALRTIENICSQGAIWASRFTSQDVISNLCYIYRASGKSENIRLTAGSCLVRLVRFNPSCIQSVTDKLSSKDMACALVKGNPREQQITLNLLNMIMVGGNVLTSIGRYLLPLMEEKNLVSSLISLIEQGSEVLKGKAIVFVAFLCKSVRRWLPHFFCNARLLSSVDRLAREKDVYVQQCLTGSLHIVASIVPSLLDMIIGDIQQMMGGRRHGHISSPLTSRAAPKTNIHLFPVVLHLLGSSTFKRKVVSPQVLQQLSDLIRHIETPFQGRDDFQITLLRVIESITEEFSVILENPEIFVHKILPSLAVLYKGNKDGDARFLCLKILFDAMVIFLNEPSLDGQRLEDLKQIANLHFLPLYPALIEDDDPIPMYAQKLLVMLIECNYIKISDILHLKTISQCFEFLLGDLSNANVSSVKLCLALASAPEMESRILSQLKVVRRIGILLEFVYAKDMEDFLEPTLGLCRALLLRSVSCRKGFIYSKEPFLLGDGTPEQKVLVNQLECIRDISDFGNNLGVLLELSGSSEANIADIASECVVFLVTAAPREGTTGLLTNLHKVSVILESWRRGGCLLLVQRMLHSLGYACRQYLAHAMILSLSISEISRIEAIISDIKSSSTPRLANDAMLVAMELQRLHRCI* 1373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10568545 10575249 + CsaV3_3G014080.1 Csa03g01408 522313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01408 1372 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1368 IPR044591 GO:0000911|GO:0000914|GO:0008017
Csa03g01408 1372 SMART serkin_6 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01408 1372 MobiDBLite consensus disorder prediction 295 309 - -
Csa03g01408 1372 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Csa03g01408 1372 MobiDBLite consensus disorder prediction 370 385 - -
Csa03g01408 1372 MobiDBLite consensus disorder prediction 282 357 - -
Csa03g01408 1372 MobiDBLite consensus disorder prediction 477 509 - -
Csa03g01408 1372 SUPERFAMILY ARM repeat 572 933 IPR016024 -
Csa03g01408 1372 ProSiteProfiles Protein kinase domain profile. 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01408 1372 SUPERFAMILY Protein kinase-like (PK-like) 1 284 IPR011009 -
Csa03g01408 1372 CDD STKc_ULK4 3 256 - -
Csa03g01408 1372 MobiDBLite consensus disorder prediction 370 434 - -
Csa03g01408 1372 Gene3D - 569 1102 IPR011989 -
Csa03g01408 1372 Coils Coil 427 447 - -
Csa03g01408 1372 MobiDBLite consensus disorder prediction 310 339 - -
Csa03g01408 1372 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01408 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Csa03g01408 1372 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Csa03g01408 1372 MobiDBLite consensus disorder prediction 447 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01408 K17545 ULK4; serine/threonine-protein kinase ULK4 [EC:2.7.11.1] - csv:101217007 2654.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01408 Csa-Chr3:10568545 Csa05g00535 Csa-Chr5:3410317 3.85E-50 dispersed
Csa03g01408 Csa-Chr3:10568545 Csa07g00227 Csa-Chr7:1788691 8.67E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77984 PF00069 Pkinase 1.40E-67 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01408 Csa_Chr03 FPKM 17.591398 13.781889 58.557007 59.927212 61.417461 72.61731 48.783859 14.044152 15.620938 17.464359