Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01409 ATGACCATGGAGCTTTTCGAAATTCAACCAGCTGAACTTAAGTTCACTTTTGAGTTGAAGAAGCAAAGTTCATGCTTGATACAACTTATCAATAAGTCTGAGCAACATATTGCTTTCAAGGTAAAAACTACATCTCCCAAGAAGTACTGTGTGCGACCCAATACTGGCATTATTAAGCCCAAGAATACGTGTGACTTCACAGTCACCATGCTAGCTCAGCGTACAGCTCCACCTGATATGCAATGCAAAGACAAGTTCCTGGTTCAAGGCACAGTCATCTCCCCTGGAACATCTGAAGAGGACATAACATCTGATGTGTTCGCGAAAGATAGTGGCAAGCATATTGAAGAGAAGAAGCTGAAGGTCTTTCTAGCAAGTGCAACACCTACTCCCGTTTTGTTACCAATTAACGGTGAATTGAAACTAGATTCAAACCATGAAACTTCCATGCCAAGAGATAGAATGCAAACAGGAGTTGAGAACATACCTCCACCTAGTAAGGTTGCAGAAGACTCTAATGGACTTGATACCCGGAAACACATAGATGAACTTAGACCAGTTGATACACCAGTATCGTTATCTCCACCTTATAAGGTGGCTGAGGGAGTTGAGAAGATCGATACTTGTAAAGATGCAGATGAGAATGGAGCAGCTGAAAATGTTCCAACAAGACGAAGTGAGGTGGCCGAATCAGTTGAGAATATTGAAACCATGCCAGCTGAGGGAATTGAGGAATCAAAACTATCGAAGGATCTACCAGAATTAAACTTAACGAAAGACTTTCAAGAGCTGAAATCAAAGCTAGCTCTCATGGATGCCGAACTACTAGAGGCTGAAGCTACCATAATGAGGCTGAAAAAGGAAAGGACGGTAACAACTCAAGAAAGGGAAATGCTCAAGCGTGATTTGGAGACATTGAGAAAAAGTGGCCAAAGAAGTATCCAAGTAGGCTTCCCTTTAATGTATGTTTTGATGGTTGCTTGTATTAGTCTTCTTGTTGGATATTTCATCCACCCCTATTAG 1023 41.54 MTMELFEIQPAELKFTFELKKQSSCLIQLINKSEQHIAFKVKTTSPKKYCVRPNTGIIKPKNTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKLKVFLASATPTPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKHIDELRPVDTPVSLSPPYKVAEGVEKIDTCKDADENGAAENVPTRRSEVAESVENIETMPAEGIEESKLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRLKKERTVTTQEREMLKRDLETLRKSGQRSIQVGFPLMYVLMVACISLLVGYFIHPY* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10580399 10585325 + CsaV3_3G014090.1 Csa03g01409 522314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01409 340 Gene3D Immunoglobulins 2 127 IPR013783 -
Csa03g01409 340 Pfam MSP (Major sperm protein) domain 6 109 IPR000535 -
Csa03g01409 340 ProSiteProfiles Major sperm protein (MSP) domain profile. 5 125 IPR000535 -
Csa03g01409 340 MobiDBLite consensus disorder prediction 148 173 - -
Csa03g01409 340 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 1 339 - -
Csa03g01409 340 Coils Coil 261 302 - -
Csa03g01409 340 PIRSF VAMP_assoc_prot 1 338 IPR016763 GO:0005789
Csa03g01409 340 SUPERFAMILY PapD-like 5 131 IPR008962 -
Csa03g01409 340 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 339 IPR016763 GO:0005789
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01409 - - - csv:101217249 666.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02828 Csa-Chr1:24853721 Csa03g01409 Csa-Chr3:10580399 4.92E-57 dispersed
Csa03g01409 Csa-Chr3:10580399 Csa05g00419 Csa-Chr5:2777655 2.04E-46 dispersed
Csa03g01409 Csa-Chr3:10580399 Csa02g00355 Csa-Chr2:2457756 1.37E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006295 1 6 0 1 1 1 2 1 1 1 0 0 2 1 1 2 0 0 2 1 1 1 1 1 1 1 1 3 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01409 Csa_Chr03 FPKM 5.772487 4.062475 6.131735 6.596422 5.878456 8.957442 4.353764 3.171942 2.684409 1.792657