Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01411 ATGTTAGAGAAAGGCAAAACTTCGGCTTTCACTACACATTTCCATTACATATCACAATCCTCGAAATCTCCATTCTCACCTTCTTCTTCTACTTCGTCTTCTTCTTCTCTGTTTTCTTCAATTTCCCTGAATTTCTCTTCAATTTTCTCCCCAAGATTCTTCTTCATTTCCTCCATCTTCTTCATAATTCCCACTCTTTCTTCACTTTCAATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTCTTGGTTAGAATCGAGAGTTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCCTGTGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATAGTTAAAACTCCTGAGGTTTCTGCTAGATTGACGTTTCCTATTTCTGTTAAACAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCTCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACCATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAGAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTATCACCTAAAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAATTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTTCTATCGAGCCAGGAGGGGTGGCTCCAATACAAACTGAATTCTCGCCGAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACGCAGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACGATTGCTTCAGTGAAAAATTTTCAGTTAGTAGCTTCACCTGAAAATGGAGTTGCCGGACCTGAACATGAGAAGATCATTCTTCAATTTGGAAAAGTTGGAAAGGATATATTTACTATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1374 44.18 MLEKGKTSAFTTHFHYISQSSKSPFSPSSSTSSSSSLFSSISLNFSSIFSPRFFFISSIFFIIPTLSSLSMSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASSIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHADNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10605878 10613554 + CsaV3_3G014110.1 Csa03g01411 522316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01411 457 Gene3D Tubby Protein; Chain A 162 457 IPR025659 -
Csa03g01411 457 ProSitePatterns Tub family signature 1. 387 400 IPR018066 -
Csa03g01411 457 SUPERFAMILY F-box domain 98 148 IPR036047 GO:0005515
Csa03g01411 457 Pfam Tub family 166 452 IPR000007 -
Csa03g01411 457 ProSitePatterns Tub family signature 2. 442 457 IPR018066 -
Csa03g01411 457 PRINTS Tubby superfamily signature 220 236 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 236 260 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 285 312 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 369 386 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 387 403 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 414 433 IPR000007 -
Csa03g01411 457 PRINTS Tubby superfamily signature 435 457 IPR000007 -
Csa03g01411 457 SUPERFAMILY Tubby C-terminal domain-like 154 457 IPR025659 -
Csa03g01411 457 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 71 457 - -
Csa03g01411 457 PANTHER TUBBY-RELATED 71 457 - -
Csa03g01411 457 Pfam F-box domain 108 152 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01411 Csa-Chr3:10605878 Csa03g01871 Csa-Chr3:14425098 1.34E-151 dispersed
Csa06g00404 Csa-Chr6:3531561 Csa03g01411 Csa-Chr3:10605878 3.51E-153 transposed
Csa06g00522 Csa-Chr6:4410794 Csa03g01411 Csa-Chr3:10605878 5.48E-151 transposed
Csa07g02085 Csa-Chr7:20108075 Csa03g01411 Csa-Chr3:10605878 5.13E-17 transposed
Csa03g01411 Csa-Chr3:10605878 Csa06g00572 Csa-Chr6:4906059 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31190 PF01167 Tub 1.10E-110 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01411 K19600 - csv:101217713 830.861