Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01412 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAGGAGGAAGACAGAAGACAGAACGGGGAGGAGGAAATTAGGGTTTCTGTTAAGCCGGAGGTTGTTCAGGTTCAGGTTAACAATGCTCGTAATGGTGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGACGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGGGAGCAAGTTGCCGCCGGTTGGCCGTCTTGGCTCTCTGCTGTCGCCGGTGAAGCTATCAATGGATGGATTCCTCGCCGTGCTGACTCTTTTGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTTTACAAAGCAAGGGATTCTTTGACAGGGAAGATTGTGGCTCTAAAGAAAGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAGATTCTCATCCTGCGGCGTCTTGATCATCCCAATGTTGTAAAACTCGAAGGTTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCACGATCAAGTTTACTGAACCGCAGGTTAAATGCTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGCTACGTGCTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCGGATTTTGGATTGGCTTCCGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAGCCTATAATGCCCGGTCGCACAGAGGTCGAACAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGATGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAACCTCAACATTCATACAAGAGATGCATAACAGAGACATTTAAAGACTTCCCACCATCGTCTCTGCCACTTATCGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACTGCTGCTTTAAACAGTGAATTTTTCACTACCAAACCATATGCTTGTGAGCCTTCCAGCCTCCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGACTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAGAAATCACGAGCACGTGATCGAGCTGTTCGTGCAATACCTGCCCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGGCGTCTTATAACACACGCGAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCTCTAGCATCTTCGCATCACATCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACGATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGACGGAAAAAACACACAGCAGGGGACGGCCATTCATCAAAATCATCTAAGGACTTACGAAAAGACAAGAGTTCTGCTCGGATCTAA 1716 47.49 MGCVFGREVSENPVQKEEEDRRQNGEEEIRVSVKPEVVQVQVNNARNGGSRKEVEDDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPTIKFTEPQVKCYMNQLLSGLEHCHNRYVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCITETFKDFPPSSLPLIETLLAIDPAERLTATAALNSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLASSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKSSARI* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10610724 10615878 - CsaV3_3G014120.1 Csa03g01412 522317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01412 571 PANTHER OS01G0367700 PROTEIN 57 553 - -
Csa03g01412 571 MobiDBLite consensus disorder prediction 1 85 - -
Csa03g01412 571 MobiDBLite consensus disorder prediction 541 571 - -
Csa03g01412 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01412 571 MobiDBLite consensus disorder prediction 531 571 - -
Csa03g01412 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Csa03g01412 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Csa03g01412 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Csa03g01412 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01412 571 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01412 571 MobiDBLite consensus disorder prediction 11 33 - -
Csa03g01412 571 PANTHER CELL DIVISION PROTEIN KINASE 57 553 - -
Csa03g01412 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Csa03g01412 571 MobiDBLite consensus disorder prediction 477 498 - -
Csa03g01412 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Csa03g01412 571 MobiDBLite consensus disorder prediction 49 72 - -
Csa03g01412 571 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00986 Csa-Chr1:6137843 Csa03g01412 Csa-Chr3:10610724 0 dispersed
Csa03g01412 Csa-Chr3:10610724 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa05g03013 Csa-Chr5:30389560 Csa03g01412 Csa-Chr3:10610724 7.68E-172 dispersed
Csa05g03200 Csa-Chr5:31644976 Csa03g01412 Csa-Chr3:10610724 0 dispersed
Csa06g02830 Csa-Chr6:24674968 Csa03g01412 Csa-Chr3:10610724 1.09E-144 dispersed
Csa03g01412 Csa-Chr3:10610724 Csa02g00346 Csa-Chr2:2385123 0 transposed
Csa03g01412 Csa-Chr3:10610724 Csa01g02837 Csa-Chr1:24909570 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77985 PF00069 Pkinase 6.60E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01412 K08819 - csv:101217952 1096.65