Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01416 ATGGCCTCAGCTGAGCCCGAGTCTGCTAAGGAGGCGCCGCCCCCGCCTTCTACCGCTGCTCCTGGTGGAATGAACTTGTTTCTAGTCGGAGTCGTGCTGAGATTTGTTGTTTTCGCGGCGGCAGTGTCGAGTGTGGTGGTCATGGTCACCAGTAAACAAACCGTCGTCAATAAGCTCCGGGGTGTCCCGCCGGGCTTCCCCGTCGAAGCCAAGTTCGACGATTCCCCTGCTTTCAGATATTTCGTAGCTGCATTATCGGTGGCAGCATTTTACAGTCTCGTCACTGGCCTCTCCTCCCTTTTCGTCATCGCTAAACCCAATTGCCACACCAAGTCCCTGCTTCATTACGCCATTTGGGATACGTTCATCTTGGGGGTGGTAGCCTCAGCCACTGGAGCTGCAGGTGGAGTCGCATACATAGGGTTAAAAGGGAACACACATGTTCGATGGGACAAAGTGTGCTACGCCTTCGATAAATTCTGCCGCCACGTCGGTGCTTCTTTGGCGACCTCCCTTTTCGCCTCCGTTGTTATGGTGTTGCTCATTTGGATATCTATTATCTCTCTCCATGCGCGGATTCGCAAGTAG 588 53.74 MASAEPESAKEAPPPPSTAAPGGMNLFLVGVVLRFVVFAAAVSSVVVMVTSKQTVVNKLRGVPPGFPVEAKFDDSPAFRYFVAALSVAAFYSLVTGLSSLFVIAKPNCHTKSLLHYAIWDTFILGVVASATGAAGGVAYIGLKGNTHVRWDKVCYAFDKFCRHVGASLATSLFASVVMVLLIWISIISLHARIRK* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10626803 10629676 - CsaV3_3G014160.1 Csa03g01416 522321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01416 195 Pfam Casparian strip membrane protein domain 27 177 IPR006702 -
Csa03g01416 195 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 27 193 - -
Csa03g01416 195 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 31 188 IPR006459 -
Csa03g01416 195 PANTHER CASP-LIKE PROTEIN 1D1 27 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01416 - - - csv:101206830 315.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01416 Csa-Chr3:10626803 Csa07g01784 Csa-Chr7:18196568 2.10E-18 dispersed
Csa03g01416 Csa-Chr3:10626803 Csa03g01417 Csa-Chr3:10635789 6.87E-15 tandem
Csa01g00022 Csa-Chr1:148053 Csa03g01416 Csa-Chr3:10626803 2.85E-21 transposed
Csa01g01573 Csa-Chr1:11352366 Csa03g01416 Csa-Chr3:10626803 3.90E-12 transposed
Csa07g02453 Csa-Chr7:22384296 Csa03g01416 Csa-Chr3:10626803 8.93E-10 transposed
Csa03g01416 Csa-Chr3:10626803 Csa06g01543 Csa-Chr6:12919698 3.60E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g355 . . . . . Bpe14g01370 . . . . . . . Car14g01471 Sed02g1219 . Cpe03g01386 Bhi01g00952 Tan10g0952 Cmetu06g1565 . . . Lcy11g1451 . . . . . . . Cone14ag0782 . Cone7ag0174 Cone4ag0172 Lsi05g01504 . . . Blo02g00582 Blo07g00188 Bda11g00540 Bda13g00164 . Bpe13g00649 . . . . Cmo14g01685 . . . . . . . . . . . . . Cla05g00615 Cam05g0677 Cec05g0687 Cco05g0682 Clacu05g0671 Cmu05g0639 Cre05g0711 . Csa03g01416 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010985 2 1 0 1 2 1 1 1 1 0 1 1 0 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01416 Csa_Chr03 FPKM 20.947319 23.223679 18.54575 20.759851 30.896881 28.747622 28.661507 30.792442 31.846313 33.03096