Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01422 ATGAGAGCTTTCATGGAAGTCTCAGCTGATGATCGTCTTGATTTTGGGAAGATGGGCTATGGATGCCAGCATTACCGTAGGAGATGTAAGATTCGAGCCCCTTGCTGCAATGAAATCTACCCCTGTCGCCATTGTCATAACGAAGCTACGAGTGTGATGAGCAGACTTTCTGATCGTCATGAACTCAATCGTTTTGACGTTAAACAAGTCGTCTGTGCAGTCTGTGACACGGAGCAGCCAGTTGCTCGAGTTTGCACGAATTGTGGTGTTAATATGGGGGAGTACTTCTGTGAAATATGCAAATTCTATGATGATGATATTGAGAAGGGGCAGTTCCATTGTGAGGATTGTGGAATTTGTAGGGTTGGCAGTCGAGAAAAGTATTTTCATTGCAAGAAGTGTGGATCGTGTTACCATGTAAATTTGCGTGACAATCATTCCTGCATCGAGAACTCTATGCAGCACCATTGTCCAATTTGTTATGAGTACCTTTTTGACACGCTGAAAGATGTTTCTGTTATGAAATGCGGACATACGATGCACCTTGAATGTTACTCTGAGATGATAAATCGTGATAAATACTGTTGTCCGATTTGCTCGAAGTCAGTTGTCGACATGTCCAAAGCATGGAAACAATTGGATGAGGAGATTGAAGCAACAGTCATGCCAGAGGAATATCGTCACAAAAAGGTTTGGATTTTGTGCAATGACTGCAACGACACGACAGAAGTTTACTTTCACATAATTGGGCAGAAATGCTGCCACTGCCAATCGTACAACACGCGCGCCATTGCTCCTCCAGTTCTTCCACAGTGA 816 43.5 MRAFMEVSADDRLDFGKMGYGCQHYRRRCKIRAPCCNEIYPCRHCHNEATSVMSRLSDRHELNRFDVKQVVCAVCDTEQPVARVCTNCGVNMGEYFCEICKFYDDDIEKGQFHCEDCGICRVGSREKYFHCKKCGSCYHVNLRDNHSCIENSMQHHCPICYEYLFDTLKDVSVMKCGHTMHLECYSEMINRDKYCCPICSKSVVDMSKAWKQLDEEIEATVMPEEYRHKKVWILCNDCNDTTEVYFHIIGQKCCHCQSYNTRAIAPPVLPQ* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10652316 10656428 - CsaV3_3G014220.1 Csa03g01422 522327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01422 271 SUPERFAMILY RING/U-box 155 205 - -
Csa03g01422 271 Gene3D - 231 266 - -
Csa03g01422 271 Pfam Ring finger domain 156 199 IPR001841 -
Csa03g01422 271 Pfam Zinc-ribbon 204 262 IPR039512 -
Csa03g01422 271 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
Csa03g01422 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 271 - -
Csa03g01422 271 SMART ring_2 157 199 IPR001841 -
Csa03g01422 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 230 IPR013083 -
Csa03g01422 271 SUPERFAMILY CHY zinc finger-like 19 91 IPR037274 GO:0008270
Csa03g01422 271 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Csa03g01422 271 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
Csa03g01422 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 5 271 - -
Csa03g01422 271 ProSiteProfiles Zinc finger RING-type profile. 157 200 IPR001841 -
Csa03g01422 271 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01422 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - csv:101219616 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00396 Csa-Chr1:2454211 Csa03g01422 Csa-Chr3:10652316 1.26E-52 dispersed
Csa03g01422 Csa-Chr3:10652316 Csa07g01785 Csa-Chr7:18199241 5.21E-120 dispersed
Csa03g01422 Csa-Chr3:10652316 Csa06g02623 Csa-Chr6:23051480 1.95E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g352 . . . . . Bpe14g01145 . . . . Cma06g01471 Cma14g01639 Car06g01268 Car14g01465 Sed02g1217 Cpe08g00210 Cpe03g01381 Bhi01g00960 Tan10g0963 Cmetu01g0074 . . . Lcy11g1444 . . . . . . . . Cone15ag0784 . Cone4ag0170 Lsi05g01510 . . Cme06g00698 Blo02g00584 . . Bda13g00166 . . . . . Cmo06g01470 Cmo14g01678 . . . . . . . . . . . . . Cla05g00622 Cam05g0683 Cec05g0692 Cco05g0688 Clacu05g0677 Cmu05g0645 Cre05g0716 . Csa03g01422 Chy06g00663 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001789 2 2 0 2 2 2 4 2 1 2 2 2 4 2 2 4 2 4 4 1 2 2 1 2 2 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01422 Csa_Chr03 FPKM 1.578947 0.0 1.833788 0.0 5.74756 3.092411 1.441837 3.445134 2.203629 2.432258