Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01426 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAGTAGTAATGGTGTGAAGGAAGCTACTAAGAAGGATACAGCTAAGGATGGCTCCACCGCTCAGTCTCACCATGTTACCAGAGTGGGCTCAGATAAATCAAAATCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACCATTCAAAAGGATGGAACAACAGCACACATTGCAGCCCAAACGTTTACATTTCGGGAGCTTGCAACAGCCACAAAGAACTTTAGATCAGAATGCTTGCTGGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCCTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAGTTTTTGGTGGAGGTTCTAATGCTAAGCCTGTTGCATCACCCAAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGACCAACGTCTTCTTGTATATGAGTTTATGCCATTGGGTTCATTGGAAGATCATTTGCACGATCTTCCACCAGACAAGGAGCCCTTGGATTGGAATACCAGAATGAAGATTGCAGCTGGTGCTGCGAAAGGATTGGAATATTTGCACGACAAAGCAAATCCCCCTGTTATATATCGAGACTTGAAGTCATCTAATATTCTTCTTGACGAAGGCTACCACCCCAAGCTGTCAGATTTTGGTCTTGCAAAATTGGGTCCAGTTGGTGATAAGACTCATGTCTCAACGAGAGTGATGGGAACGTATGGTTACTGTGCTCCAGAGTATGCCATGACTGGCCAACTCACTCTCAAATCGGATGTATATAGTTTTGGAGTTGTCTTTTTAGAACTTATCACAGGACGCAAGGCAATCGATAATACCAGAGGTCCAGGGGAGCACAATCTTGTTGCATGGGCTCGGCCACTTTTTAAAGATCGACGGAAGTTCCCTAAGATGGCTGATCCACTATTGCAAGGTCGATATCCCATGCGGGGACTTTACCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAGGAGCAGGCTGCAACAAGACCTCTAATCGGGGACGTTGTTACTGCTTTGACCTATTTAGCTTCCCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGTAATCGAATGGGTGGTTCTACTCCACGAGCTCGAGATGAACGAAGAAGTTTTCCTGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGGCGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACTTCCATAGGGAATTGAGTTGTGGAGGTACAGAGCTGAGCAAAATTGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAACGACAAGAATCTCTGCGAGACAGTCCTGTATATGCTGGGAGAGCAAGGGAAACGCCAAGGAACCGTGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAGAGCAAATGCGCAAGGCAGCTTTGACGGTTCACAAGAATGA 1545 46.93 MGGCFPCFGSSDEDGSSNGVKEATKKDTAKDGSTAQSHHVTRVGSDKSKSRSVSDAKKEPTIQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRSFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDFHRELSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYAGRARETPRNRDLNRERAVAEAKVWGENWRERKRANAQGSFDGSQE* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10668107 10673025 - CsaV3_3G014260.1 Csa03g01426 522331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01426 514 MobiDBLite consensus disorder prediction 18 33 - -
Csa03g01426 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Csa03g01426 514 MobiDBLite consensus disorder prediction 386 411 - -
Csa03g01426 514 Gene3D Transferase(Phosphotransferase) domain 1 165 383 - -
Csa03g01426 514 MobiDBLite consensus disorder prediction 42 64 - -
Csa03g01426 514 MobiDBLite consensus disorder prediction 1 65 - -
Csa03g01426 514 PANTHER OS07G0668900 PROTEIN 1 508 - -
Csa03g01426 514 Pfam Protein kinase domain 92 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01426 514 SUPERFAMILY Protein kinase-like (PK-like) 71 362 IPR011009 -
Csa03g01426 514 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 508 - -
Csa03g01426 514 CDD STKc_IRAK 94 363 - -
Csa03g01426 514 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01426 514 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Csa03g01426 514 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Csa03g01426 514 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01426 514 MobiDBLite consensus disorder prediction 419 435 - -
Csa03g01426 514 MobiDBLite consensus disorder prediction 374 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03377 Csa-Chr1:30405029 Csa03g01426 Csa-Chr3:10668107 2.23E-160 dispersed
Csa03g00526 Csa-Chr3:4374615 Csa03g01426 Csa-Chr3:10668107 0 dispersed
Csa03g01426 Csa-Chr3:10668107 Csa06g00794 Csa-Chr6:6377052 0 dispersed
Csa03g04036 Csa-Chr3:35232968 Csa03g01426 Csa-Chr3:10668107 2.00E-93 dispersed
Csa07g02390 Csa-Chr7:21999971 Csa03g01426 Csa-Chr3:10668107 1.77E-99 dispersed
Csa03g01426 Csa-Chr3:10668107 Csa05g00641 Csa-Chr5:4259160 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77986 PF00069 Pkinase 7.90E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01426 - - csv:101207561 1048.11