Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01429 ATGTTTGGGTTTCGACGGCGAATGAAGCTTGGGAGATTGAAAGTCCAGCTTTCGGATCCTGCTCAGGGAACTAGGAGTCCTATTCGAAACCCCAAGCGAGGGAGCGGCTCTAATAGTGAATGTGCTGCGCCGGCTAGTAGGCATTCTGAAGAGCATGATGAGGGGCAACGAGCTTCTGACGTTCCAGATATTAGTAATAATGGTGCTTCGGGACAGTCTGAGAATTGGATGGTCTTGTCAATTGCAGGGGAAAAACCAGCTCCTCGTTTCAATCATGCCGCAACTGTGATTGGAAATAAGATGATTGTTGTTGGTGGTGAATCTGGGAGTGGATTATTAGATGATGTTCAGGTTCTTAATTTTGATAAATTTACTTGGACTAGAGCCTCATCAAAGCTTTACCTGTCACCTAGCTCACTTCCATTGAAGATCCCTGCATGCAAGGGTCACAGCCTGGTTTCTTGGGGGAAGAAAGCTCTCTTGGTTGGGGGTAAGACAGAGCCAGGAAATGAGAGAGTGGCAGTGTGGGCATTTGACACAGAGACAGAATGTTGGTCGCTGATGGAAGCAAAGGGAGATATACCTGTTGCTAGAAGTGGTCACACTGTAGTTAGAGCTAGCTCTGTTTTAATCCTTTTTGGAGGTGAAGATAGTAGGAGGAAAAAACTCAACGACCTTCACATGTTTGACCTTAAATCTTTTACTTGGCTCCCTCTACATTGCACAGGAACAGGACCATCTGCAAGATCCAACCATTTGGCAGCTCTTTATGATGATAAAACTCTACTTATATTTGGAGGGACATCAAAATCCCGAACCCTGAACGATTTATATTCGCTCGACTTTGAAACAATGGTGTGGTCAAGAATAAAGGTACGGGGTTTTCACCCATCACCTAGAGCTGGTTGCTGTGGTGTTCTCTGTGGAACTAAATGGTGCATCGCAGGGGGTGGAAGCAGAAAAAAGAGACATGCGGATACTTTGATCTTTGACATACTGAAACTTGAGTGGTCCGTTGCTCTCACATCACCTCCATCTTCTGTCACCACCAATAAGGGTTTCAGCTTAGTGCTCGTGCAGCACAAGGAGAAGGATTTTCTTCTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGGTTGAAGTATTGACCATGGAAAAGAAGGAGCCATCTTTGAGGCACCGATCCAATCCCATTGACTCAACTGCTAGACAAAATCTAGCATCTGCTATTGAACATGGTTCTGGAAGAAAATCCATTTCAGAGACCTCACTTGTCGATCCAAATCCTATTCCTGGAAATATTTCACTCCGCAAGCAATTTCATAATGATGAATCCTTTGACAAAACTACTAAGATAGCCAAGACTGCAGAAGATGATTCCTCCACTTCTCAGGTAACAGAGAACAAGTTGACTCAATCTGGGGGTGAATTCCATGGGGAGACACTGCCTTCAGTATACGAGTATGAAAGCTCAAATCCCTTCAAGGAAGGAGTTGGATACCACCATCCCATTGATAACACTGATCTATTCAGCGAAAGCAGTGGTAAAATAGTAACATCATCCACTTTTTCAAGTATATATCAATTCTATGAAGCGAAAATGGCGGCCTTAATCAGAAAGAATGGAGTTCTCGAAGGGCAACTAGCAGCAGCAACGGCGAGCCGAGAAGCCGTGGAGAAAAACTTATCCTCTGCTCTAAAGATCCGGCAGGAGATGGAGAAAAGAATAGCTGATATGATAAAGGAAATGGAAATGCTGAGAGATAAGCTGGCAGGAGTAGAAATAGCAAAAGAAGAGGCCAATAGTCTGTCAAATATTGTCCACTCTGACAATGTACGCCTTGAACATGATGTTGCTTTCCTCAAAGCAGTTTTGGATGACACTCAGAAGGAGCTTCATTCTACTAGAGGAGTCCTTGCTGGAGAAAGGTCCAGGGCCTTCCAACTACAGGTAGAGGTATTTCATCTAAAGCAAAGATTGCAATCCATGGAGAATCGAGCACCAACACCAAGGAAACCGTTCCACATGTAG 2037 44.33 MFGFRRRMKLGRLKVQLSDPAQGTRSPIRNPKRGSGSNSECAAPASRHSEEHDEGQRASDVPDISNNGASGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGESGSGLLDDVQVLNFDKFTWTRASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLVGGKTEPGNERVAVWAFDTETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSRRKKLNDLHMFDLKSFTWLPLHCTGTGPSARSNHLAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHPSPRAGCCGVLCGTKWCIAGGGSRKKRHADTLIFDILKLEWSVALTSPPSSVTTNKGFSLVLVQHKEKDFLLAFGGSKKEPSNQVEVLTMEKKEPSLRHRSNPIDSTARQNLASAIEHGSGRKSISETSLVDPNPIPGNISLRKQFHNDESFDKTTKIAKTAEDDSSTSQVTENKLTQSGGEFHGETLPSVYEYESSNPFKEGVGYHHPIDNTDLFSESSGKIVTSSTFSSIYQFYEAKMAALIRKNGVLEGQLAAATASREAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERSRAFQLQVEVFHLKQRLQSMENRAPTPRKPFHM* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10696463 10704114 + CsaV3_3G014290.1 Csa03g01429 522334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01429 678 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 1 677 - -
Csa03g01429 678 Coils Coil 557 605 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 19 44 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 45 59 - -
Csa03g01429 678 Pfam Kelch motif 88 131 IPR006652 GO:0005515
Csa03g01429 678 SUPERFAMILY Kelch motif 74 341 IPR015915 GO:0005515
Csa03g01429 678 Coils Coil 613 633 - -
Csa03g01429 678 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 677 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 458 480 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 412 443 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 456 482 - -
Csa03g01429 678 Gene3D - 192 396 IPR015915 GO:0005515
Csa03g01429 678 MobiDBLite consensus disorder prediction 417 431 - -
Csa03g01429 678 Pfam Galactose oxidase, central domain 210 255 - -
Csa03g01429 678 Pfam Galactose oxidase, central domain 156 204 - -
Csa03g01429 678 MobiDBLite consensus disorder prediction 1 71 - -
Csa03g01429 678 Gene3D - 53 191 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01429 - - - csv:101220563 1343.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00079 Csa-Chr1:495596 Csa03g01429 Csa-Chr3:10696463 2.31E-06 dispersed
Csa02g00447 Csa-Chr2:3185792 Csa03g01429 Csa-Chr3:10696463 1.68E-08 dispersed
Csa02g00508 Csa-Chr2:3579729 Csa03g01429 Csa-Chr3:10696463 4.42E-18 dispersed
Csa03g01429 Csa-Chr3:10696463 Csa06g03520 Csa-Chr6:28694933 1.50E-08 dispersed
Csa03g01429 Csa-Chr3:10696463 Csa02g01678 Csa-Chr2:16012904 7.77E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01429 Csa_Chr03 FPKM 14.675425 15.197148 29.801828 30.557455 19.221788 19.87203 19.419121 51.74226 47.820724 47.579914