Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01431 ATGGCCGCCATTTCAATTTGCTTCGCTCCTCAAGCTCTGGCACGGCCCAGAGTTCGGAACCCTAAAAGCACACCATCACCCAAGAAGCTTCGTGGGAACAATAAGCTTGATCGCAACAGCGTCAAGATCAAAACCAATTCGAAAGAGTTATCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCACCCAGGGAAGACTTTGCTATTCTTAGCTTTGATTCCCCATCTTTCGGTTCTTCTTCTTCTTCTTCTTCTTCGAAGGATTCTTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAAGAAGATGATTCGGATTTTTTGAAATATGAGGATGGGGAGGAAGAAGGGGATGGAGGGTTGGACGGCAAATTGGGGTTTGAAAATGGGTACGAGAAGTTTGAAGTGTTTGAAGGGGAATATGATGCTGAAATGGAGGAGTATGGTGATAGTGACGTGGAAGAGGAAGATGAAGAAGGAGAGAAGGTTTTGGCGTTTAGGAAGGGGAAATTTGTTAATGCCGATGAAGCTTACGATCCTGGCGAAGAAGGAAGCTCTTTCATCGAGATTGAAGATGGGAAGGAGAAGGGGGTGCCAGCCGTAATGCGGTGCTTTGATCGAGCGAAAATCTACGTTAAAGCTGGAGACGGTGGAAATGGGGTTGTGGCATTTCGGCGAGAGAAGTATGTGCCTATGGGTGGCCCATCAGGAGGAGATGGAGGTAGAGGTGGGAGTGTGTATGTTGAAGTTGACGAGTCGATGAATTCGCTATTACCATTTCGAAATGGTATTCATTTTCGTGCTGAAAGAGGTAGTCATGGGCAAGGGAGAATGCAAATTGGGGCAAAGGGGGAGGATGTTGTGGTCAAGGTGGCACCGGGAACAGTGATCAGAGACGCATTTAGCCAGGAGGTTCTTTTGGAATTATTGCAGCCGGGGCAGCGTGCACAGTTGCTGCGTGGTGGAAGGGGTGGAAGGGGCAATGCATCATTCAAGTCCGGAACAAATAAAGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCAAACTTAGGCGTAGTTTCGTTTGATTACGATTCAACTATGGTAGTAGCAGATCTTCCAGGATTACTCGAAGGGGCACATGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACCGAGAGGTGTTCTGCACTGGTGCATGTGGTTGATGGATCAGGACCACAACCAGAATATGAATTTGATGCTGTTCGTTTGGAGCTGGAGCTCTTCAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTGGCATATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGCGGGATTGAACCTTTTTGCATGAGTGCAGTAAAACGAGAGGGCACTCATGAAGTCATTAGTGCTGCATATCAGCGGTTAAGGGAGAATAAAGAAAACAACAAGGCATTTCAAGGTGGGAAAATACCAGAGAATTTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTATTAATGATAGTGGTTCATGGCATGTAGTAGGATCTGGTCTACAACGTTTTGTTCAGATGACAAATTGGCGTTACACGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCTTGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCGTAAAGGAGGGTGACACAGTATTTATTGCAGAGATGGAGATGATCTGGCATGATTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCGGATTCTGTCAAATGGCCAGAGTGGAAGTAA 1989 45.9 MAAISICFAPQALARPRVRNPKSTPSPKKLRGNNKLDRNSVKIKTNSKELSSIGVEATTYTRLPPREDFAILSFDSPSFGSSSSSSSSKDSSEVKLLDSDVAIIEEEDDSDFLKYEDGEEEGDGGLDGKLGFENGYEKFEVFEGEYDAEMEEYGDSDVEEEDEEGEKVLAFRKGKFVNADEAYDPGEEGSSFIEIEDGKEKGVPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGSVYVEVDESMNSLLPFRNGIHFRAERGSHGQGRMQIGAKGEDVVVKVAPGTVIRDAFSQEVLLELLQPGQRAQLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKREGTHEVISAAYQRLRENKENNKAFQGGKIPENLDHVADRIHKQRSASIDDYEIINDSGSWHVVGSGLQRFVQMTNWRYTESERRFQHVMEACGVNKSLRKLGVKEGDTVFIAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10711413 10718012 + CsaV3_3G014310.1 Csa03g01431 522336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01431 662 CDD Obg 366 533 IPR031167 GO:0005525
Csa03g01431 662 Pfam 50S ribosome-binding GTPase 367 487 IPR006073 GO:0005525
Csa03g01431 662 ProSiteProfiles Obg domain profile. 207 365 IPR006169 -
Csa03g01431 662 Hamap GTPase Obg [obg]. 208 534 IPR014100 GO:0000287|GO:0003924|GO:0005525
Csa03g01431 662 Gene3D - 365 544 IPR027417 -
Csa03g01431 662 MobiDBLite consensus disorder prediction 77 92 - -
Csa03g01431 662 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 366 534 IPR031167 GO:0005525
Csa03g01431 662 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 571 637 IPR015349 GO:0000166
Csa03g01431 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 537 IPR027417 -
Csa03g01431 662 SUPERFAMILY Obg GTP-binding protein N-terminal domain 210 364 IPR036726 -
Csa03g01431 662 ProSitePatterns GTP1/OBG family signature. 419 432 IPR006074 GO:0005525
Csa03g01431 662 Gene3D - 572 640 IPR036346 -
Csa03g01431 662 SUPERFAMILY Obg GTP-binding protein C-terminal domain 569 639 IPR036346 -
Csa03g01431 662 Gene3D GTP1/OBG domain 205 364 IPR036726 -
Csa03g01431 662 Pfam Domain of unknown function (DUF1967) 571 637 IPR015349 GO:0000166
Csa03g01431 662 MobiDBLite consensus disorder prediction 15 43 - -
Csa03g01431 662 MobiDBLite consensus disorder prediction 77 97 - -
Csa03g01431 662 ProSiteProfiles Obg C-terminal (OCT) domain profile. 562 639 IPR015349 GO:0000166
Csa03g01431 662 PRINTS GTP1/OBG GTP-binding protein family signature 368 388 IPR006073 GO:0005525
Csa03g01431 662 PRINTS GTP1/OBG GTP-binding protein family signature 389 407 IPR006073 GO:0005525
Csa03g01431 662 PRINTS GTP1/OBG GTP-binding protein family signature 417 432 IPR006073 GO:0005525
Csa03g01431 662 PRINTS GTP1/OBG GTP-binding protein family signature 434 452 IPR006073 GO:0005525
Csa03g01431 662 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 164 612 - -
Csa03g01431 662 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 164 612 IPR045086 GO:0003924|GO:0005525
Csa03g01431 662 MobiDBLite consensus disorder prediction 323 348 - -
Csa03g01431 662 MobiDBLite consensus disorder prediction 640 662 - -
Csa03g01431 662 Pfam GTP1/OBG 211 364 IPR006169 -
Csa03g01431 662 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 210 532 IPR014100 GO:0000287|GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01431 - - - csv:101207804 1217.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01035 Csa-Chr3:8328714 Csa03g01431 Csa-Chr3:10711413 1.90E-08 dispersed
Csa03g01431 Csa-Chr3:10711413 Csa03g04248 Csa-Chr3:37200341 1.96E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01431 Csa_Chr03 FPKM 7.303257 7.863426 7.899614 8.324081 15.727115 16.051271 14.78383 2.746169 2.298647 2.542567