Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01433 ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGTTTCTGGACCTGATACTACATCTCATGGAGACTCCCTTTGGCCTTTGGGATCCAGGGATAGGGATTCCTACCCTGAACGTCCCGATGAAGCTGATTGTATATATTACCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCCCGTGAACGTACCCCGGCTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCAGAGCGAATAGGGCAACCTGTTTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCGTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTCAGTCCCGTGTCACTGAATTTCTATGGCTATCCACTAAGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAAGTTGCACCAATAGCAGGTCAAGTGCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCCTCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCGAGGCCTTCATTGCTGTCAAACCCGTATGTCCCTGGTCCTTATGGTCCTATGTTGGTTTCCCCGGGCGTTGTTCAGTTCCCAAGTTGGAGTCCTTATCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTCTATGGTATGGCACATGTTTCGCCTTCTGCATCTGGCTTTGCAGGATCTTATCAGCCCATGCCATCTACTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTATATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACTTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGTGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGCTGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGCGGATTGGTCAGTTCAACTACATCAAGGACAGAAATGCATTCTCTTTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGTCCGTCAGTGGGGAGTACCTCCAGCACCACCAGTGCGGAGGGTCGTACTTGA 1446 48.82 MKPYGHSIEGSHSDPSPEWTVSGPDTTSHGDSLWPLGSRDRDSYPERPDEADCIYYLRTGFCGYGSRCRFNHPRERTPALGGSRPGGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPIAGQVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSNPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSTGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVSSTTSRTEMHSLSSVQRSSQSSGPSVGSTSSTTSAEGRT* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10732393 10736764 - CsaV3_3G014330.1 Csa03g01433 522338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01433 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Csa03g01433 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Csa03g01433 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Csa03g01433 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Csa03g01433 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Csa03g01433 481 Gene3D - 292 339 - -
Csa03g01433 481 Gene3D - 45 123 - -
Csa03g01433 481 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
Csa03g01433 481 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Csa03g01433 481 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Csa03g01433 481 SUPERFAMILY CCCH zinc finger 307 330 IPR036855 GO:0046872
Csa03g01433 481 Gene3D - 124 172 - -
Csa03g01433 481 Gene3D - 348 396 - -
Csa03g01433 481 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Csa03g01433 481 MobiDBLite consensus disorder prediction 404 481 - -
Csa03g01433 481 MobiDBLite consensus disorder prediction 277 300 - -
Csa03g01433 481 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Csa03g01433 481 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 464 - -
Csa03g01433 481 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Csa03g01433 481 MobiDBLite consensus disorder prediction 425 481 - -
Csa03g01433 481 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Csa03g01433 481 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Csa03g01433 481 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Csa03g01433 481 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Csa03g01433 481 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Csa03g01433 481 MobiDBLite consensus disorder prediction 1 46 - -
Csa03g01433 481 PANTHER PROTEIN PHOSPHATASE RELATED 14 464 - -
Csa03g01433 481 MobiDBLite consensus disorder prediction 13 33 - -
Csa03g01433 481 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Csa03g01433 481 SUPERFAMILY CCCH zinc finger 95 123 IPR036855 GO:0046872
Csa03g01433 481 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Csa03g01433 481 MobiDBLite consensus disorder prediction 277 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03342 Csa-Chr1:29987598 Csa03g01433 Csa-Chr3:10732393 4.17E-102 dispersed
Csa03g01433 Csa-Chr3:10732393 Csa06g01349 Csa-Chr6:11415829 5.73E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31193 PF00642 zf-CCCH 1.30E-07 CL0537 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01433 - - csv:101221033 907.131