Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01442 ATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGTTTTCTTCTGCTAATGAGGCATCCTCAAGCAAATACGTGGAAGATGCCAGCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGACCTCAATGGAGTAAGGATGAGGTTGAGCAGTTCTACGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTTGCTGCTGCAGTACGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAACAGGGCCTATTTGTCACTTCCGGAGGGTACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCATTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAGGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAGCAACTTGAAAGGATCAGACGCACATTTTGGAGATGCTTCACAATCACAGTTACTTCTAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGGGTTCCTGTATCATATTCATATGACAAAGATGGTAGAGATAAGCTCTTTTCACCCTCCAAGCATAATAGCAAGGCAAAGGTTGATGATCCAAACGATGACGATGTTGCTCATGAGATAGCATTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAAGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGATATGATGAGTACGAAGTTTCGATGTAGTGAAATGGACGAAGGTGGTTGCGAATTAAGCTTAGGAAGCACTGGAGCTGATAATGCAGACTATGACCTGGGGAAAAGTACTCGTGAGGTTCAAAGAAAGGGTAAAAGATACTATGGAAAGAAGCCAGAAGTTGAAGAAAGCATGTACAACCACTTGGATGACATTAAGGAAGCTTGCAGTGGGACAGAAGAGGGACAAAAATCGGGCAGTTTGAGGGGAAAGCTTGAAAATGAGGATTTGGATGTAAAATCTGTGAGATCCTCTTTTAAAGGACCGAGGAAAAGAAGTAAGAAAGCTCTATTTGGAGATGAATGTTCAGCGTTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGACTGAGCCTCCTGCAAAGGTTAAAGAAGAAAATCTCGATGTCATGGGCAAGTCGAAAATGAAAGGGAGTCATTCAGTTGCTGGATCTGAAATTTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAGCAACGTTGGTCCTATTTCTGAAGCAGAGGGAATTCAAGGATCCAATAACGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACGACTCTCGTCTCCATGATACTCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCTGTTGGTAAAGTTAAACGCTCCCCTCACAATGCTGGACTTAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAGCCCAAGTTCTATCAAATAATCCAATCAGCTTACCTACCAAACTGAGGAGCAGGCGGAAGATGAAACTGTGGAAATCACAAAGAGATGCAAAAATTTCTGATAGTACTTCGATTGATCAACTTAATATTACTGCTCAAACAATAGATGACAGACAACATGATCTCAAGGAGCGGCATTCTAGTTGCCTATCTTGGCATAAATTGCGTAGATGGTGTATTTTTGAGTGGTTCTATAGTGCAATTGACTTCCCATGGTTTGCTAAGTGTGAATTCGTAGAGTACTTAAATCACGTTGGATTGGGTCACATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATCCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCCGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAACGTGTTATTGCGATTCATCCGAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGACTCTTGATAAAATATTTGGGAACCTCAACGAGGTTAAGATTAACGGCTTACTAAAGGAAGCGAAGATTGAAGATTATATGAAATCAACCAGTAATGATAAACTTGAAAGCACTGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCATATCAACAAATTAATTAAACAAGCAAAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGACAAGTTCCCAACCTTCTGCTCTTGCTCAAATTCAAGCAAAAGAAGCTGACGTTCATGCTCTTTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAATCAAATAAATGGGGACAACTTGCTCAAGGATTCAGAAAACTTTAAGAAGCAATATGCTGCTGTGCTACTACAGTTGAATGAAGTTAATGAACAGGTTTCCTCTGCTCTGTATTGCCTAAGGCAGCGCAATACTTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTCGGGCGACCCTTGCTCTCATTCTCAGGAACCCGGTTCCCATGTAGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAAGCAATGCAGGCCATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCACAGTGGATGATCTGGCCTTGCCAACTGTGAGATCAGCAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATTTCAATGCATGTACATCAAACACATCGACTGCTAGTTTTGTAGTTGGTCCCAAATCCAATGGCTCATCCGACAAGACTGAAATGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTCTACTCATGATTCAGAAATGCACAGAACGACAGTTCCCACCGTCTGACGTTGCTCAGGTACTGGATTCTGCTGTCAGTAGTTTGCAGCCATGTTGTCCTCAGAACCTTCCACTATACGCTGAGATACAGAAATGCATGGGAATTATAAGGAGTCAGATACTTGCGCTTATACCCACGTAG 3486 42.03 MAPSRKSRSVNKRFSSANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGAIRKPQKRLRGKSRSSNLKGSDAHFGDASQSQLLLTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDGRDKLFSPSKHNSKAKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIESHVLSPIRNDRMRSESDMMSTKFRCSEMDEGGCELSLGSTGADNADYDLGKSTREVQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLENEDLDVKSVRSSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDTNAETEPPAKVKEENLDVMGKSKMKGSHSVAGSEISALKTSKTGKAFGSNVGPISEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNDSRLHDTLKIKAADEAKSSVGKVKRSPHNAGLKSGKISKPLDHHSSSSTDHKREDGDYALSTAQVLSNNPISLPTKLRSRRKMKLWKSQRDAKISDSTSIDQLNITAQTIDDRQHDLKERHSSCLSWHKLRRWCIFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLDKIFGNLNEVKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKVDLGCSNLQAKFGLSETVGIQQETSSQPSALAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTSPLMFLKPVHDSGDPCSHSQEPGSHVAEIVGSSRAKAQTMIDEAMQAILALKKGESNLENIEEAIDFVSNRLTVDDLALPTVRSAAADTSNAAPVSQNHFNACTSNTSTASFVVGPKSNGSSDKTEMEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVSSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT* 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10774432 10788286 + CsaV3_3G014420.1 Csa03g01442 522347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01442 1161 MobiDBLite consensus disorder prediction 448 544 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 197 223 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 1 25 - -
Csa03g01442 1161 PANTHER LIN-9 1 1161 IPR010561 GO:0006351|GO:0017053
Csa03g01442 1161 Coils Coil 887 910 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 480 512 - -
Csa03g01442 1161 SUPERFAMILY Homeodomain-like 42 89 IPR009057 -
Csa03g01442 1161 Coils Coil 681 701 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 1 37 - -
Csa03g01442 1161 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Csa03g01442 1161 Gene3D - 2 99 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 527 544 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 116 152 - -
Csa03g01442 1161 SMART DIRP_2 629 730 IPR033471 -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 181 223 - -
Csa03g01442 1161 SMART sant 43 91 IPR001005 -
Csa03g01442 1161 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1161 IPR028306 -
Csa03g01442 1161 CDD SANT 47 81 IPR001005 -
Csa03g01442 1161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 81 IPR017930 -
Csa03g01442 1161 Coils Coil 1013 1033 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 460 474 - -
Csa03g01442 1161 MobiDBLite consensus disorder prediction 116 134 - -
Csa03g01442 1161 Pfam Myb-like DNA-binding domain 46 81 IPR001005 -
Csa03g01442 1161 Pfam DIRP 628 729 IPR033471 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01442 - - - csv:101221669 2290.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00443 Csa-Chr2:3152552 Csa03g01442 Csa-Chr3:10774432 9.43E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31200 PF06584 DIRP 2.40E-30 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01442 Csa_Chr03 FPKM 47.471615 52.810661 9.470828 9.194471 30.87936 36.411018 32.403122 4.893847 5.554758 5.053666