Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01460 ATGCTTCAAGAAGCTTCAACAAAACCCGAGGGAGAACTTGAAGTTAGCTTCGGTTATAAATGCAATGGCAACATAGGTGAAATTCATGATGTTTCTGACAAGTTGGAGATTCAGTCTGGACTTCAAAGGGTGAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTGAGTGCGAATGCCACCCTAGCGAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCAACCTGGGATTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCGCCTACTCTTTCAAGGTTGGATATACTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCGACCTCTGATTATGATTCATACTTGTTGAAATCCATGAGTTCTCCATCTGGAGGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAACGGAAGAGATGCTGCTGATTTTCTTGCTGGCACATTGTATGAAACTATTGTATTTTATTTTAATCTACTAGATTGGGAAGCCAAGAATGAAACCTCTGACGGTTTAGACATGCATGGTTCACATCTTCTTGATGATAGTAACATTACTCAAGGAAGATTTTCTCCTATGGGAAACAATAGTAAAATTTCTTCAGATATCCACAATGTGTTAGAGAACCATTCATATGCCAAAGCAGGAATGAAAAACTACCCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTAGAACAGGAAATGGAGGACCGCCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACGCTAAATTTGGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAAGGTTCTATGAGAAGGAATAGGGGTCTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCTCAGTTACAACATGATCATCCCGATGATCCGACAATAATCGTTGGTGGCAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCAGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCGTATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATTTTTACTGGAGCAGCTTCTGTTGAAAGCAGCTAATTGTGCAGGTTTTAGCAAGGAAGAGTTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATAATAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCAACTAGCATGTAA 1566 41.44 MLQEASTKPEGELEVSFGYKCNGNIGEIHDVSDKLEIQSGLQRVSSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSDYDSYLLKSMSSPSGGEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEAKNETSDGLDMHGSHLLDDSNITQGRFSPMGNNSKISSDIHNVLENHSYAKAGMKNYPLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGSMRRNRGLKAVQLTESHTVDNELERAQLQHDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAANCAGFSKEELITIPAGRRRKYHDDVTVIIIILGTNQRTTRASTSM* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10886692 10892018 - CsaV3_3G014600.1 Csa03g01460 522365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01460 521 Pfam Protein phosphatase 2C 271 459 IPR001932 -
Csa03g01460 521 ProSiteProfiles PPM-type phosphatase domain profile. 139 508 IPR001932 -
Csa03g01460 521 CDD PP2Cc 152 508 IPR001932 -
Csa03g01460 521 SMART PP2C_4 130 506 IPR001932 -
Csa03g01460 521 SUPERFAMILY PP2C-like 153 509 IPR036457 -
Csa03g01460 521 Gene3D - 120 517 IPR036457 -
Csa03g01460 521 PANTHER PROTEIN PHOSPHATASE 2C 3 520 IPR015655 GO:0004722|GO:0006470
Csa03g01460 521 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01460 Csa-Chr3:10886692 Csa06g01491 Csa-Chr6:12600999 6.46E-13 dispersed
Csa03g01460 Csa-Chr3:10886692 Csa04g01492 Csa-Chr4:14662814 1.93E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01460 - - csv:101202885 1004.2