Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01466 ATGGCCATGGCTCTCAGACCCATCGATAATGCTCTTCCAGTTACACCAGAAAGGCCGAAGAAGCAAGCCAAAGTTGTGGTTCCAGTCCAGAAGGGGAACGATGAGAATCAAGCTCCACTTCCTCCTTCTGCAGATGCCACCATTGATTATGTTTCTTCTGAAAATCTTAAGCCCTTGACGGACCCTGATTCCAATAATTTCATTGAAGGGTTAGATTCGAAGGATTGGGTGAAGGTCTGTGAAACGCTCAATAATGCCAGGCGTCTCGCAATTTTTCATTCTGACCTTTTGCTTCCCTCATTAGAGAAAGTTATGGTGGTTTTGATGAAGTCGATGAAGAATCCTAGAAGTGCCCTAATTAAAACCTCGATCATGGCTTCCGCCGACATTTTTAATGCGTTTGGTGATCGGTTACTCGATACATCCACTAGCAATGCGTTTGATCAATTGCTGCTCCAATTACTACTCAAAGCTTCTCAAGACAAGAAGTTTGTATGCGAAGAAGCAGACAAGGCACTGAAAGCTCTAGTGCAATCCATGACTCCTCTGCCTCTGCTGCAGAAACTTCGCCCATATGTTTCTCATTCCAACCTTAGAGTCAGAGCCAAAGCCGCCATTCCAATCTCTAACTGTGTCTCTAAGATGGGTCTGGAAGAAATGAACCAATATGGGTTTGTTCCATTGCTTCAAATGGCTTCAGATTTGTTAAACGATAGGCTACCTGAAGCAAGGGAAGCGGCTCGGAGCATCGTGATGGGAATGTTCAAAGCATACACAGAGAACGAGGAAGATAAACAGGAGGCTTGGCAAAGCTTTTGCCAAGCTAATCTGTCCCCAATTCACTCTCAGTCCCTGCTCAAAGTTGTTACCTCCTCTCAATAG 882 44.9 MAMALRPIDNALPVTPERPKKQAKVVVPVQKGNDENQAPLPPSADATIDYVSSENLKPLTDPDSNNFIEGLDSKDWVKVCETLNNARRLAIFHSDLLLPSLEKVMVVLMKSMKNPRSALIKTSIMASADIFNAFGDRLLDTSTSNAFDQLLLQLLLKASQDKKFVCEEADKALKALVQSMTPLPLLQKLRPYVSHSNLRVRAKAAIPISNCVSKMGLEEMNQYGFVPLLQMASDLLNDRLPEAREAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10919544 10922278 - CsaV3_3G014660.1 Csa03g01466 522371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01466 293 SMART TOG_3 49 283 IPR034085 -
Csa03g01466 293 Pfam CLASP N terminal 101 262 IPR024395 -
Csa03g01466 293 PANTHER CLASP 6 289 - -
Csa03g01466 293 MobiDBLite consensus disorder prediction 1 23 - -
Csa03g01466 293 Gene3D - 47 278 IPR011989 -
Csa03g01466 293 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 289 - -
Csa03g01466 293 SUPERFAMILY ARM repeat 61 274 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01466 - - - csv:101204184 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01466 Csa-Chr3:10919544 Csa03g03919 Csa-Chr3:34349241 5.80E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g303 . . . . . . . . . . . Cma14g01618 Car06g01291 Car14g01441 Sed02g1179 Cpe08g00184 Cpe03g01359 Bhi01g01015 Tan10g1009 Cmetu06g2058 . Hepe05g1446 . Lcy11g1412 . . . . . . . Cone14ag0763 . . . Lsi05g01541 . . Cme06g00735 . Blo07g00172 Bda11g00524 . . Bpe13g00666 . Bma06g01500 . Cmo06g01497 Cmo14g01655 . . . . . . . . . . . . . Cla05g00654 Cam05g0714 Cec05g0726 Cco05g0723 Clacu05g0708 Cmu05g0675 Cre05g0748 . Csa03g01466 Chy06g00706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008188 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01466 Csa_Chr03 FPKM 6.290476 6.543818 9.457109 8.685379 3.768241 1.879183 4.039176 5.393178 6.351549 6.029917